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AT4G15475.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AF360328EMBL:AF361808
EMBL:AL161541EMBL:AY056338EMBL:AY084229EMBL:CP002687
EMBL:Z97339EnsemblPlants:AT4G15475EnsemblPlants:AT4G15475.1entrez:827219
Gene3D:3.80.10.10GeneID:827219Genevisible:Q9C5D2Gramene:AT4G15475.1
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF435HOGENOM:HOG000243338InParanoid:Q9C5D2
InterPro:IPR001611InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675
KEGG:ath:AT4G15475KO:K10268OMA:CPEVTDVPaxDb:Q9C5D2
Pfam:PF12937Pfam:PF13516Pfam:Q9C5D2PhylomeDB:Q9C5D2
PRIDE:Q9C5D2PRO:PR:Q9C5D2ProteinModelPortal:Q9C5D2Proteomes:UP000006548
RefSeq:NP_567467.1SMART:SM00256SMART:SM00367SMR:Q9C5D2
STRING:3702.AT4G15475.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT4G15475
UniGene:At.26216UniGene:At.66613UniProt:Q9C5D2
Coordinates (TAIR10) chr4:+:8845927..8848701
Molecular Weight (calculated) 66426.30 Da
IEP (calculated) 8.49
GRAVY (calculated) 0.02
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
101: SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
201: CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
301: LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
401: EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
501: PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
601: SVISYLCMDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)