suba logo
AT4G15430.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ERD (early-responsive to dehydration stress) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1447 Blast hits to 1280 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 705; Plants - 434; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5594eggNOG:KOG1134EMBL:AL161541EMBL:AY064008EMBL:CP002687EMBL:Z97338EnsemblPlants:AT4G15430
EnsemblPlants:AT4G15430.1entrez:827214ExpressionAtlas:Q8VZM5GeneID:827214Genevisible:Q8VZM5GO:GO:0006811GO:GO:0016021
hmmpanther:PTHR13018hmmpanther:PTHR13018:SF46HOGENOM:HOG000241414InParanoid:Q8VZM5InterPro:IPR003864InterPro:IPR027815InterPro:IPR032880
iPTMnet:Q8VZM5KEGG:ath:AT4G15430OMA:HIFASHTPaxDb:Q8VZM5Pfam:PF02714Pfam:PF13967Pfam:PF14703
Pfam:Q8VZM5PhylomeDB:Q8VZM5PIR:H71418PRIDE:Q8VZM5PRO:PR:Q8VZM5ProteinModelPortal:Q8VZM5Proteomes:UP000006548
RefSeq:NP_001154237.1RefSeq:NP_193278.4STRING:3702.AT4G15430.1TAIR:AT4G15430TMHMM:TMhelixUniGene:At.27104UniProt:Q8VZM5
Coordinates (TAIR10) chr4:+:8828214..8831354
Molecular Weight (calculated) 87171.80 Da
IEP (calculated) 9.55
GRAVY (calculated) 0.10
Length 761 amino acids
Sequence (TAIR10)
(BLAST)
001: MATINDIGVA AAINIVTAFA FLLAFAIFRI QPVNDRVYFP KWYLKGLRSS SIQTGGFGSK FINLDFRSYI RFLNWMPEAL KMPEPELVDH AGLDSVVYLR
101: IYLLGLKIFF PIACVAFTTM VPVNWTNKGL DRLRHSNISF SDIDKLSLSN IPNGSPRFWV HLCMAYAITF WTCFILKREY QNIALMRLQF LANDQRRPNQ
201: FTVLVRNIPA DPHESICELV EHFFKVNHPD HYLTFQAVHD ATKLSELVLT RKQMQNLLDY NINKHMRNLS NRPVIKMGFL GCCGEEADGI KYYTSVVEGL
301: TREISEEKQR LRTGTKSIVP AAFVSFKSRW GAAVCAQTQQ TRNPTEWLTE WAAEPRDIYY DNLALPYVDL KIRRLIVGVA YFFLTFFFMI PIAFVQSLAN
401: IEGIEKAFPF LKPLIEVKLL KSIIQGFLPG IALKIFLLFL PRILMQMSKF EGFVSTSSLE RRAATRFYMF QFINVFLGSI VTGTAFQQLN SFLNQSANDI
501: PKTIGVSIPM KATFFITYIM VDGWAGVAGE ILRLKPLIIY HLKNSFLVRT EKDREEATDP GTIGFNTGEP QIQLYFLLGL VYAAVSPILL PFILVFFGLA
601: FVVYRHQVIN VYNQKYESAG KFWPDVHRRV VTALVVSQLL LMGLLSTKHA SKSTPLLLVL PLLTIGFHKH CKNRYQPAFV TYPLQQEAMI KDTLDRIREP
701: NLNLKAFLRD AYAHPEFRVG EDPEPEEKLE SDMSPPDLVA TKRWSWRNTP LPSKDSCREI P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)