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AT4G15120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G22160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS32eggNOG:ENOG4111BGEEMBL:AK117493EMBL:AL161540EMBL:BT005406EMBL:CP002687EMBL:Z97337
EnsemblPlants:AT4G15120EnsemblPlants:AT4G15120.1entrez:827178GeneID:827178Gramene:AT4G15120.1hmmpanther:PTHR33179hmmpanther:PTHR33179:SF7
HOGENOM:HOG000114092InterPro:IPR008889KEGG:ath:AT4G15120OMA:SPWQYANPfam:PF05678PhylomeDB:O23366PIR:A71415
Proteomes:UP000006548RefSeq:NP_567458.1STRING:3702.AT4G15120.1TAIR:AT4G15120UniGene:At.33211UniProt:O23366
Coordinates (TAIR10) chr4:+:8634779..8635360
Molecular Weight (calculated) 20738.30 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.78
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSNNDWSQ FYNNQTFFTT ATSTVTTTTT TATSADSPLS PDNRRVAKPT RRRSRASRRT PTTLFNTDTA NFRAMVQQFT GGPSAVAFGS SPSSGFSLTS
101: SDPTAGVSSS PWQYANLQNQ MAHNELMQQQ RPYMFSSSNN VSTLSYPNAV ATDGFVGAEE SREGGGGGGG GYAPSSERNS NTTYSEEKTV YYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)