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AT4G15030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YN91eggNOG:KOG1297EMBL:CP002687EnsemblPlants:AT4G15030EnsemblPlants:AT4G15030.1entrez:827162ExpressionAtlas:F4JJC4
GeneID:827162Gramene:AT4G15030.1hmmpanther:PTHR11567InterPro:IPR019129ncoils:CoilPaxDb:F4JJC4Pfam:PF09725
PRIDE:F4JJC4ProteinModelPortal:F4JJC4Proteomes:UP000006548RefSeq:NP_193239.5STRING:3702.AT4G15030.2TAIR:AT4G15030UniGene:At.43881
UniProt:F4JJC4
Coordinates (TAIR10) chr4:+:8578989..8581180
Molecular Weight (calculated) 33208.60 Da
IEP (calculated) 9.10
GRAVY (calculated) -1.63
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSAAIRSD IYDREERKQQ YQAHIRGLNA YERHKKFLKD YVRFYGKDKP AEVKLPVKTD QDTLREGYRF IRSEEDDLDP SWEQRLVKRY YDKLFKEYCI
101: ADMSRYKTGK MGLRWRTEKE VMTGKGQFMC GSKHCDEKEG LASYEVNFSY HEAGEDKQAL VKLVACERCA EKLYYKKRKE GERSESKEKK KQKRKRSKSH
201: SEDDTDEEEK RKEGERSESN EKKKQKRNRS QSHSEYDTDE EDRRKGKTRK SKLESADREG KDDENFDEYM EGMFPGNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)