suba logo
AT4G15000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L27e protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 764 Blast hits to 764 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
BioGrid:12456eggNOG:COG2163eggNOG:KOG3418EMBL:AL161540
EMBL:AY063987EMBL:AY085487EMBL:AY096731EMBL:CP002687
EMBL:Z35388EMBL:Z97337EnsemblPlants:AT4G15000EnsemblPlants:AT4G15000.1
entrez:827159ExpressionAtlas:P51419Gene3D:2.30.30.30GeneID:827159
Genevisible:P51419GO:GO:0003735GO:GO:0006412GO:GO:0022625
GO:GO:0022626HOGENOM:HOG000210138InParanoid:P51419InterPro:IPR001141
InterPro:IPR008991InterPro:IPR014722InterPro:IPR018262ncoils:Coil
OMA:NAGSSMWPaxDb:P51419Pfam:P51419Pfam:PF01777
PhylomeDB:P51419PIR:E71413PRIDE:P51419PRO:PR:P51419
ProDom:PD009396PROSITE:PS01107ProteinModelPortal:P51419Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_193236.1scanprosite:PS01107
SMR:P51419STRING:3702.AT4G15000.1SUPFAM:SSF50104TAIR:AT4G15000
UniGene:At.24910UniProt:P51419UniProt:Q0WRB8
Coordinates (TAIR10) chr4:+:8571896..8572303
Molecular Weight (calculated) 15608.40 Da
IEP (calculated) 10.96
GRAVY (calculated) -0.54
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKFLKQNKA VILLQGRYAG KKAVIIKSFD DGNRDRPYGH CLVAGLKKYP SKVIRKDSAK KTAKKSRVKC FIKLVNYQHL MPTRYTLDVD LKEVATLDAL
101: QSKDKKVAAL KEAKAKLEER FKTGKNRWFF TKLRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)