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AT4G14950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21294794 (2011): endoplasmic reticulum
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNARE associated Golgi protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE associated Golgi protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12450eggNOG:ENOG410XQHAeggNOG:KOG1109EMBL:AL161540
EMBL:AY059730EMBL:BT015780EMBL:CP002687EMBL:Z97337
EnsemblPlants:AT4G14950EnsemblPlants:AT4G14950.1entrez:827153ExpressionAtlas:Q5XF36
GeneID:827153Genevisible:Q5XF36GO:GO:0000407GO:GO:0005783
GO:GO:0005789GO:GO:0006887GO:GO:0007029GO:GO:0007030
GO:GO:0010256GO:GO:0010506GO:GO:0016021GO:GO:0016192
hmmpanther:PTHR10281hmmpanther:PTHR10281:SF44HOGENOM:HOG000242387InParanoid:Q5XF36
IntAct:Q5XF36InterPro:IPR032816iPTMnet:Q5XF36KEGG:ath:AT4G14950
OMA:MENELIWPaxDb:Q5XF36Pfam:PF09335Pfam:Q5XF36
PhylomeDB:Q5XF36PIR:C85164PIR:H71412PRIDE:Q5XF36
PRO:PR:Q5XF36Proteomes:UP000006548RefSeq:NP_567450.1STRING:3702.AT4G14950.1
TAIR:AT4G14950TMHMM:TMhelixUniGene:At.21742UniGene:At.47941
UniProt:Q5XF36
Coordinates (TAIR10) chr4:+:8545517..8547722
Molecular Weight (calculated) 45850.30 Da
IEP (calculated) 7.71
GRAVY (calculated) 0.33
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)