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AT4G14900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FRIGIDA-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT3G22440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12444eggNOG:ENOG410IGJGeggNOG:ENOG410YC7XEMBL:AL117321
EMBL:AY054618EMBL:AY060551EMBL:AY081543EMBL:AY086472
EMBL:CP002687EnsemblPlants:AT4G14900EnsemblPlants:AT4G14900.1entrez:827147
GeneID:827147Genevisible:Q940H8GO:GO:0009908GO:GO:0030154
Gramene:AT4G14900.1hmmpanther:PTHR31791hmmpanther:PTHR31791:SF2HOGENOM:HOG000083443
InParanoid:Q940H8IntAct:Q940H8InterPro:IPR012474KEGG:ath:AT4G14900
ncoils:CoilOMA:KHREVTIPaxDb:Q940H8Pfam:PF07899
Pfam:Q940H8PhylomeDB:Q940H8PRIDE:Q940H8PRO:PR:Q940H8
ProteinModelPortal:Q940H8Proteomes:UP000006548RefSeq:NP_567447.1STRING:3702.AT4G14900.1
TAIR:AT4G14900UniGene:At.4307UniProt:Q940H8
Coordinates (TAIR10) chr4:-:8521759..8523607
Molecular Weight (calculated) 59367.10 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.41
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSPDPGEL IKSSQPSFFE FQKQASLMTS CNLLWKELSE HFTSMEQNLM KKSEALRQMI ETLDNQTQSS IELLKHREVT IDHSVEIAEG KVEERVRAAL
101: DSLEKARDCG DEDTGEVDDG DGLLSALKSL CLKMDARGFW GFVIARKKEL ENLRSQIPVA LVDCVDPPKL VLEAVSEVFP VDKRGGGEKV SNDFGWACVV
201: ILESLIPVMV DPVMGKSRLL VTPSVKEKAK EIAETWKASL EERGGIENVK TPDVHTFLQH LVTFGIVKKD DLALYRKLVV GSAWRKQMPK LAVSVGLGDQ
301: MPDMIEELII RGQQLDAVHF TFEVGLVHLF PPVPLLKAYL RDAKKATALI TDDSNNSGRS AHLVARKEQS ALRAVLKCIE EYKLEEEFPP ENLKKRLDQL
401: EKTKTEKRKP AVIPANKRTR ASYSGPMPPA KAGRITNAYV SSFPPPPPTF IRSQSHSPQY GVPAYTTSPP TIYSNRSPPY QYSPEAVHGS YQTSPVSYPT
501: AYGTYCSPVA APPPPVYHPH PHHHHHIQHA YY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)