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AT4G14800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
vacuole 0.500
ASURE: cytosol,vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 20S proteasome beta subunit D2
Curator
Summary (TAIR10)
Encodes 20S proteasome beta subunit PBD2 (PBD2).
Computational
Description (TAIR10)
20S proteasome beta subunit D2 (PBD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit D1 (TAIR:AT3G22630.1); Has 3669 Blast hits to 3669 proteins in 441 species: Archae - 493; Bacteria - 47; Metazoa - 1152; Fungi - 905; Plants - 523; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-552-MONOMERBioGrid:12432EC:3.4.25.1EMBL:AF043535
EMBL:AK227835EMBL:AL161540EMBL:AY086350EMBL:BT024588
EMBL:CP002687EMBL:Y13175EMBL:Z97337EnsemblPlants:AT4G14800
EnsemblPlants:AT4G14800.1entrez:827135ExpressionAtlas:O24633Gene3D:3.60.20.10
GeneID:827135Genevisible:O24633GO:GO:0004298GO:GO:0005634
GO:GO:0005737GO:GO:0005839GO:GO:0051603hmmpanther:PTHR11599
hmmpanther:PTHR11599:SF6HOGENOM:HOG000188743InParanoid:O24633IntAct:O24633
InterPro:IPR001353InterPro:IPR016050InterPro:IPR023333InterPro:IPR029055
merops:T01.984Pfam:O24633Pfam:PF00227Pfscan:PS51476
PhylomeDB:O24633PIR:A71411PRIDE:O24633PRO:PR:O24633
PROSITE:PS00854PROSITE:PS51476ProteinModelPortal:O24633Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_193216.1
scanprosite:PS00854SMR:O24633SUPFAM:SSF56235TAIR:AT4G14800
tair10-symbols:PBD2UniGene:At.395UniProt:O24633
Coordinates (TAIR10) chr4:+:8500398..8502058
Molecular Weight (calculated) 21985.30 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.07
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)