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AT4G14640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calmodulin 8
Curator
Summary (TAIR10)
encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms.
Computational
Description (TAIR10)
calmodulin 8 (CAM8); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion, calcium-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 11 (TAIR:AT3G22930.1); Has 33710 Blast hits to 22755 proteins in 1732 species: Archae - 3; Bacteria - 155; Metazoa - 13848; Fungi - 7315; Plants - 7405; Viruses - 2; Other Eukaryotes - 4982 (source: NCBI BLink).
Protein Annotations
BioGrid:12411eggNOG:COG5126eggNOG:KOG0027EMBL:AF178074EMBL:AL161539EMBL:BT024688EMBL:CP002687
EMBL:Z97336EnsemblPlants:AT4G14640EnsemblPlants:AT4G14640.1entrez:827114Gene3D:1.10.238.10GeneID:827114Genevisible:O23320
GO:GO:0005509GO:GO:0005513GO:GO:0005622GO:GO:0019722Gramene:AT4G14640.1hmmpanther:PTHR23050hmmpanther:PTHR23050:SF189
HOGENOM:HOG000233018InParanoid:O23320IntAct:O23320InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT4G14640
KO:K13448OMA:NNDQIVEPaxDb:O23320Pfam:O23320Pfam:PF13499Pfscan:PS50222PhylomeDB:O23320
PIR:A71409PRO:PR:O23320PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:O23320Proteomes:UP000006548RefSeq:NP_193200.1
scanprosite:PS00018SMART:SM00054SMR:O23320STRING:3702.AT4G14640.1SUPFAM:SSF47473TAIR:AT4G14640tair10-symbols:AtCML8
tair10-symbols:CAM8UniGene:At.4288UniProt:O23320
Coordinates (TAIR10) chr4:+:8397800..8399996
Molecular Weight (calculated) 17156.90 Da
IEP (calculated) 3.76
GRAVY (calculated) -0.49
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MEETALTKDQ ITEFKEAFCL FDKDGDGCIT VEELATVIRS LDQNPTEQEL HDIITEIDSD SNGTIEFAEF LNLMAKKLQE SDAEEELKEA FKVFDKDQNG
101: YISASELSHV MINLGEKLTD EEVEQMIKEA DLDGDGQVNY DEFVKMMINI D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)