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AT4G14600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.530
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Target SNARE coiled-coil domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Target SNARE coiled-coil domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT1G29060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISPBeggNOG:ENOG410Y34REMBL:AK118653EMBL:AL161539
EMBL:AY074370EMBL:AY085955EMBL:AY091400EMBL:CP002687
EMBL:Z97336EnsemblPlants:AT4G14600EnsemblPlants:AT4G14600.1entrez:827108
GeneID:827108Genevisible:Q8VXX9GO:GO:0000139GO:GO:0005789
GO:GO:0005886GO:GO:0015031GO:GO:0016021GO:GO:0016192
Gramene:AT4G14600.1hmmpanther:PTHR12791hmmpanther:PTHR12791:SF32HOGENOM:HOG000239806
InParanoid:Q8VXX9InterPro:IPR000727KEGG:ath:AT4G14600KO:K08505
OMA:YQKDFLEPaxDb:Q8VXX9Pfam:Q8VXX9Pfscan:PS50192
PhylomeDB:Q8VXX9PIR:E71408PRIDE:Q8VXX9PRO:PR:Q8VXX9
PROSITE:PS50192ProteinModelPortal:Q8VXX9Proteomes:UP000006548RefSeq:NP_567434.1
SMART:SM00397STRING:3702.AT4G14600.1SUPFAM:SSF58038TAIR:AT4G14600
TMHMM:TMhelixUniGene:At.33264UniProt:Q8VXX9
Coordinates (TAIR10) chr4:+:8376562..8378078
Molecular Weight (calculated) 15384.60 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.26
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNPHRSGA GGSLYGGAAP YRSREGLSTR NAAGSEEIQL RIDPMHSDLD DEITGLHGQV RQLKNIAQEI GSEAKFQRDF LDELQMTLIR AQAGVKNNIR
101: KLNMSIIRSG NNHIMHVVLF ALLVFFVLYI WSKMFKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)