AT4G14510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CRM family member 3B | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a CRM domain protein CFM3b. Homolog of CFM3a (AT3G23070). CFM3a is shown to function in the splicing of group IIB introns in chloroplasts. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CRM family member 3B (CFM3B); FUNCTIONS IN: RNA binding; INVOLVED IN: seed development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 927 Blast hits to 829 proteins in 130 species: Archae - 3; Bacteria - 35; Metazoa - 203; Fungi - 82; Plants - 394; Viruses - 11; Other Eukaryotes - 199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8337390..8341057 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102037.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.06 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 907 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAINSSHHFC PMTTTTTTSA KFVDSLGSSF CKFHGTSSSI SLRSYRFGFS FMKNVKRLSC EGSSSSSSSR NENWNRTQKQ NQFRPSKVVL NRRKDERFSD 101: LGVISGENSS RSGDVGGGSG SSSTMEKIVE KLKKYGFVDE DQFQDKEVEQ ERRIEKSSVE ERFYVEERRG GFSEESPFGV YGGNDEVKFP WEKVSSMEKK 201: ELVNGEWTAK KESRYSLAEM TLSEFELNRL RNVMFRTKSK MRVTGAGVTQ AVVDAIQEKW KGSEIVRLKI EGSSALNMRR MHEILERKTG GLVIWRSGTS 301: IALYNYKGGS NRDGSGNMNK QVYRRAERLP SSLPTSTVDQ SVQLVNLPQL EKEPTVVGNK DRTSPQEVEY EDEINELLEG LGPRYTDWQG GYPLPVDADL 401: LPGIVPGYEP PFRALPYGVR STLGTKEATS LRRIATVLPP HFALGRSRQL QGLATAMVKL WQKSLIAKVA LKRGVQLTTS ERMAEDIKRL TGGMLLSRNK 501: DFLVFYRGKS FLSLEVGEAL MEKEMLVRTL QDEEEQARLR ASSALVVPSI KANQQLARTL QDKEEQARPS ALVLPSTKAN QNLVSAGTLG ETLDATGKWG 601: KNLDNDDHVE EMKQEVEKVR SAKLVRKLER KLAFAEKKLL KAERALAKVE ESLKPAEQRT DLEGITEEER FMFQKLGLKM KAFLLLGRRG VFDGTVENMH 701: LHWKYRELIK ILVKAKTLEG AQKVAMALEA ESGGILVSVD KISKGYAVIV YRGKDYKRPT TLRPKNLLTK RKALARSLEL QKREALIKHI EAIQTRSEQL 801: RAEIEQVELV KDKGDETLYD KLDMAYSSDE ETEETDGEED DVYLDTYEDE GEDDEEGGIQ ANGSLSETDV EFGSDESDTD FGDNSASSTT PETTFVELQN 901: EELDVQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)