suba logo
AT4G14510.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CRM family member 3B
Curator
Summary (TAIR10)
Encodes a CRM domain protein CFM3b. Homolog of CFM3a (AT3G23070). CFM3a is shown to function in the splicing of group IIB introns in chloroplasts.
Computational
Description (TAIR10)
CRM family member 3B (CFM3B); FUNCTIONS IN: RNA binding; INVOLVED IN: seed development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 927 Blast hits to 829 proteins in 130 species: Archae - 3; Bacteria - 35; Metazoa - 203; Fungi - 82; Plants - 394; Viruses - 11; Other Eukaryotes - 199 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS9DeggNOG:KOG1990EMBL:AL161539EMBL:CP002687EMBL:Z97336EnsemblPlants:AT4G14510EnsemblPlants:AT4G14510.1
entrez:827098Gene3D:3.30.110.60GeneID:827098GO:GO:0003723GO:GO:0006397GO:GO:0008380GO:GO:0009507
GO:GO:0030529Gramene:AT4G14510.1hmmpanther:PTHR31846hmmpanther:PTHR31846:SF13InParanoid:F4JVH1InterPro:IPR001890InterPro:IPR033262
KEGG:ath:AT4G14510ncoils:CoilOMA:NSYSEQSPANTHER:PTHR31846:SF13PaxDb:F4JVH1Pfam:PF01985Pfscan:PS51295
PIR:D71407PRIDE:F4JVH1PROSITE:PS51295ProteinModelPortal:F4JVH1Proteomes:UP000006548RefSeq:NP_193187.3SMART:SM01103
SMR:F4JVH1STRING:3702.AT4G14510.1SUPFAM:SSF75471TAIR:AT4G14510tair10-symbols:ATCFM3Btair10-symbols:CFM3BUniGene:At.26263
UniGene:At.33273UniProt:F4JVH1
Coordinates (TAIR10) chr4:-:8337390..8341057
Molecular Weight (calculated) 102037.00 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.65
Length 907 amino acids
Sequence (TAIR10)
(BLAST)
001: MAINSSHHFC PMTTTTTTSA KFVDSLGSSF CKFHGTSSSI SLRSYRFGFS FMKNVKRLSC EGSSSSSSSR NENWNRTQKQ NQFRPSKVVL NRRKDERFSD
101: LGVISGENSS RSGDVGGGSG SSSTMEKIVE KLKKYGFVDE DQFQDKEVEQ ERRIEKSSVE ERFYVEERRG GFSEESPFGV YGGNDEVKFP WEKVSSMEKK
201: ELVNGEWTAK KESRYSLAEM TLSEFELNRL RNVMFRTKSK MRVTGAGVTQ AVVDAIQEKW KGSEIVRLKI EGSSALNMRR MHEILERKTG GLVIWRSGTS
301: IALYNYKGGS NRDGSGNMNK QVYRRAERLP SSLPTSTVDQ SVQLVNLPQL EKEPTVVGNK DRTSPQEVEY EDEINELLEG LGPRYTDWQG GYPLPVDADL
401: LPGIVPGYEP PFRALPYGVR STLGTKEATS LRRIATVLPP HFALGRSRQL QGLATAMVKL WQKSLIAKVA LKRGVQLTTS ERMAEDIKRL TGGMLLSRNK
501: DFLVFYRGKS FLSLEVGEAL MEKEMLVRTL QDEEEQARLR ASSALVVPSI KANQQLARTL QDKEEQARPS ALVLPSTKAN QNLVSAGTLG ETLDATGKWG
601: KNLDNDDHVE EMKQEVEKVR SAKLVRKLER KLAFAEKKLL KAERALAKVE ESLKPAEQRT DLEGITEEER FMFQKLGLKM KAFLLLGRRG VFDGTVENMH
701: LHWKYRELIK ILVKAKTLEG AQKVAMALEA ESGGILVSVD KISKGYAVIV YRGKDYKRPT TLRPKNLLTK RKALARSLEL QKREALIKHI EAIQTRSEQL
801: RAEIEQVELV KDKGDETLYD KLDMAYSSDE ETEETDGEED DVYLDTYEDE GEDDEEGGIQ ANGSLSETDV EFGSDESDTD FGDNSASSTT PETTFVELQN
901: EELDVQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)