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AT4G14440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.808
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3-hydroxyacyl-CoA dehydratase 1
Curator
Summary (TAIR10)
encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation
Computational
Description (TAIR10)
3-hydroxyacyl-CoA dehydratase 1 (HCD1); CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: indole-3-butyric acid response 10 (TAIR:AT4G14430.1); Has 14429 Blast hits to 14428 proteins in 1575 species: Archae - 280; Bacteria - 10321; Metazoa - 775; Fungi - 259; Plants - 265; Viruses - 0; Other Eukaryotes - 2529 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G14440-MONOMERBioCyc:MetaCyc:AT4G14440-MONOMEREC:5.3.3.8eggNOG:ENOG410IJI2eggNOG:ENOG410YFAMEMBL:AL161539EMBL:AY072398
EMBL:BT006275EMBL:CP002687EMBL:Z97336EnsemblPlants:AT4G14440EnsemblPlants:AT4G14440.1entrez:827089Gene3D:3.90.226.10
GeneID:827089Genevisible:O23300GO:GO:0004165GO:GO:0005634GO:GO:0005829GO:GO:0006635GO:GO:0009062
GO:GO:0080167Gramene:AT4G14440.1gramene_pathway:5.3.3.8gramene_pathway:PWY-5137gramene_pathway:PWY-5138hmmpanther:PTHR11941hmmpanther:PTHR11941:SF84
HOGENOM:HOG000080529IntAct:O23300InterPro:IPR001753InterPro:IPR029045iPTMnet:O23300KEGG:ath:AT4G14440KO:K18880
OMA:CHDYRIMPaxDb:O23300Pfam:O23300Pfam:PF00378PhylomeDB:O23300PIR:E71406PRIDE:O23300
PRO:PR:O23300ProteinModelPortal:O23300Proteomes:UP000006548RefSeq:NP_193180.1SMR:O23300STRING:3702.AT4G14440.1SUPFAM:SSF52096
TAIR:AT4G14440tair10-symbols:ATECI3tair10-symbols:ECI3tair10-symbols:HCD1UniGene:At.27640UniPathway:UPA00659UniProt:O23300
Coordinates (TAIR10) chr4:-:8306946..8307662
Molecular Weight (calculated) 25597.10 Da
IEP (calculated) 7.32
GRAVY (calculated) 0.12
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)