AT4G14368.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.679 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT3G23270.1); Has 23075 Blast hits to 9219 proteins in 606 species: Archae - 56; Bacteria - 2851; Metazoa - 9367; Fungi - 1087; Plants - 2969; Viruses - 60; Other Eukaryotes - 6685 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:8274279..8278810 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121380.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1106 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY 0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR 0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG 0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT 0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH 0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI 0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR 0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG 0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL 0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSFFVANG 1001: DLMSIKQKNG GIAKKIGCLR GIVIMLHHRV QRLLIQFQHQ LNLNHQLLIQ FLHQLNLNHQ LLIQFLHQLN LNHQLLLHNR ILIKQRIQKK FLMKASHHVY 1101: NSSLAK |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)