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AT4G14310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:15593128 (2005): extracellular region
FP Images

Arabidopsis cell culture (peroxisomal marker)

GFP-At4g14310
(full-length)
RFP-peroxisomal markeroverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

GFP-At4g14310
(full-length)
RFP-plastidal markeroverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046); Has 1777 Blast hits to 1531 proteins in 263 species: Archae - 12; Bacteria - 185; Metazoa - 638; Fungi - 156; Plants - 91; Viruses - 5; Other Eukaryotes - 690 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IISEeggNOG:ENOG41112FFEMBL:CP002687EnsemblPlants:AT4G14310
EnsemblPlants:AT4G14310.1entrez:827072ExpressionAtlas:F4JUQ1Gene3D:2.130.10.10
GeneID:827072Gramene:AT4G14310.1hmmpanther:PTHR35492hmmpanther:PTHR35492:SF1
IntAct:F4JUQ1InterPro:IPR011044InterPro:IPR015943KEGG:ath:AT4G14310
ncoils:CoilPaxDb:F4JUQ1PRIDE:F4JUQ1ProteinModelPortal:F4JUQ1
Proteomes:UP000006548RefSeq:NP_193167.3SMR:F4JUQ1STRING:3702.AT4G14310.2
SUPFAM:0049172SUPFAM:SSF50969TAIR:AT4G14310UniGene:At.33293
UniProt:F4JUQ1
Coordinates (TAIR10) chr4:-:8237137..8240324
Molecular Weight (calculated) 97286.80 Da
IEP (calculated) 7.68
GRAVY (calculated) -0.62
Length 893 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASTNRRRL KDINTGAGEN PSSGKKPLRS VTPLPISSKN SNPALQKSLS SKENPNPKLS HRSFGSTQKP VLRPVPRIDK SAVSGEGRVT RSTSSGLRGR
101: SSSPSDLIRV FSDLRKRNES RVIGEKGESG QDKKSGLKSS GFKQGTSEIK VEPSSVCEKA DEGSSCPVNS SKFEGSSVAR NSISDPKAHA LVGSGEKSTV
201: ALKSDSKIEK TGKGTSVALR RKSLDNVGKA MEMSKDIRGN EGSSNSTAKY PSKLHEKLAF LEGKVKKIAS DIKKTKDMLD LNNPDSSKVI ISDIHQKITG
301: IEKSMSHVID GPEKNKTTKA KSSVKGLNKE ELEDRLLPHQ RLLRSRTQSK TSSHVSKGHD SVESNKAVNA EEKPSAPVEE NAIALEFLAS LDKEKVTFMS
401: DQNALENLEV QEMDTEEPSK ENDVSKDVNL TSNLTEILRA NEALEEIDDE ENREEMELEE IDDGCMYQLN DIGSKTSTGG WFVSEGEAVI LAHDDGSCSY
501: YDVANSEVKS VYSPPDGISP NTWRDCWVVR APGADGCSGR YVVAASAGNT LESGFCSWDF YTKDIKALHI EDGSSRVSRT ALAPLPNNTS HGRNTPACAV
601: VPETQQWWYR PCGPLIASTG SFQSIVKVFD IRDGEQIMKW GVQNPVSALD YSSPLQWRNR GKLVIAETEA ISVWDVNSLH PEAQHTISSS GRKISAFHIN
701: NTDAEVGGGV RQRVSSLDAE GNDGVFCTSD SINILDFRNP SGIGAKIPKL GVNAQCVSSR GDSVFLGCTN QKSTVKKQMA SSSQVQQFSI RKQRLVSTYS
801: LPDSNSHPHH SAITQVWGNS NFVMATSGMG LFVFDTAKEE TLQQQPLTSD YGSVQTVREI IGPNDMYCPS FDYSGCRVLL ISRDRPALWR YLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)