suba logo
AT4G14300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G33410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YA8ZeggNOG:KOG4205EMBL:AJ303457EMBL:AK226323
EMBL:AL161538EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G14300
EnsemblPlants:AT4G14300.1entrez:827071Gene3D:3.30.70.330GeneID:827071
Genevisible:Q8W034GO:GO:0000166GO:GO:0003723GO:GO:0005681
GO:GO:0005737GO:GO:0006397GO:GO:0008380GO:GO:0051028
Gramene:AT4G14300.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF308HOGENOM:HOG000234441
InParanoid:Q8W034IntAct:Q8W034InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT4G14300KO:K14411MINT:MINT-1163850OMA:VAPRNSW
PaxDb:Q8W034Pfam:PF00076Pfam:Q8W034Pfscan:PS50102
PhylomeDB:Q8W034PIR:G71404PRIDE:Q8W034PRO:PR:Q8W034
PROSITE:PS50102ProteinModelPortal:Q8W034Proteomes:UP000006548RefSeq:NP_193166.2
SMART:SM00360SMR:Q8W034STRING:3702.AT4G14300.1SUPFAM:SSF54928
TAIR:AT4G14300UniGene:At.33295UniProt:Q8W034
Coordinates (TAIR10) chr4:+:8231179..8232785
Molecular Weight (calculated) 42355.80 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.76
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)