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AT4G14210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phytoene desaturase 3
Curator
Summary (TAIR10)
Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.
Computational
Description (TAIR10)
phytoene desaturase 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: zeta-carotene desaturase (TAIR:AT3G04870.2); Has 4307 Blast hits to 4306 proteins in 952 species: Archae - 70; Bacteria - 2299; Metazoa - 368; Fungi - 90; Plants - 493; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2521-MONOMERBRENDA:1.3.5.5EC:1.3.5.5eggNOG:COG3349eggNOG:ENOG410IUNMEMBL:AF360196EMBL:AL161538
EMBL:AY040007EMBL:CP002687EMBL:L16237EMBL:Z97335EnsemblPlants:AT4G14210EnsemblPlants:AT4G14210.1entrez:827061
ExpressionAtlas:Q07356Gene3D:3.50.50.60GeneID:827061Genevisible:Q07356GO:GO:0009507GO:GO:0009509GO:GO:0009534
GO:GO:0009941GO:GO:0016117GO:GO:0016166GO:GO:0016705hmmpanther:PTHR10742hmmpanther:PTHR10742:SF278HOGENOM:HOG000150110
InParanoid:Q07356InterPro:IPR002937InterPro:IPR014102InterPro:IPR023753KEGG:ath:AT4G14210KO:K02293PaxDb:Q07356
Pfam:PF01593Pfam:Q07356PhylomeDB:Q07356PIR:F71403PRIDE:Q07356PRO:PR:Q07356ProteinModelPortal:Q07356
Proteomes:UP000006548RefSeq:NP_193157.1SMR:Q07356STRING:3702.AT4G14210.1SUPFAM:SSF51905TAIR:AT4G14210tair10-symbols:PDE226
tair10-symbols:PDStair10-symbols:PDS3TIGRfam:TIGR02731TIGRFAMs:TIGR02731UniGene:At.247UniPathway:UPA00803UniProt:Q07356
Coordinates (TAIR10) chr4:-:8190426..8194769
Molecular Weight (calculated) 62967.00 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.14
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVFGNVSAA NLPYQNGFLE ALSSGGCELM GHSFRVPTSQ ALKTRTRRRS TAGPLQVVCV DIPRPELENT VNFLEAASLS ASFRSAPRPA KPLKVVIAGA
101: GLAGLSTAKY LADAGHKPLL LEARDVLGGK IAAWKDEDGD WYETGLHIFF GAYPNVQNLF GELGINDRLQ WKEHSMIFAM PSKPGEFSRF DFPDVLPAPL
201: NGIWAILRNN EMLTWPEKIK FAIGLLPAMV GGQAYVEAQD GLSVKEWMEK QGVPERVTDE VFIAMSKALN FINPDELSMQ CILIALNRFL QEKHGSKMAF
301: LDGNPPERLC MPVVDHIRSL GGEVQLNSRI KKIELNDDGT VKSFLLTNGS TVEGDAYVFA APVDILKLLL PDPWKEIPYF KKLDKLVGVP VINVHIWFDR
401: KLKNTYDHLL FSRSNLLSVY ADMSLTCKEY YDPNRSMLEL VFAPAEEWIS RTDSDIIDAT MKELEKLFPD EISADQSKAK ILKYHVVKTP RSVYKTIPNC
501: EPCRPLQRSP IEGFYLAGDY TKQKYLASME GAVLSGKFCS QSIVQDYELL AASGPRKLSE ATVSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)