AT4G14190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G42630.1); Has 17113 Blast hits to 6259 proteins in 178 species: Archae - 1; Bacteria - 6; Metazoa - 71; Fungi - 33; Plants - 16698; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8183594..8185180 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57906.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
| Length | 501 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENLTTAQFL HRATLLKKPP PPPWNLNSSF LTSTSYSIPR PSSLRRSLPL SINGDATQPT SLLHHHRFLS SLTRRLSLSG SCPLRLLQED GDWSKDHFWA 101: VIRFLRQSSR LHEILPVFDT WKNLEPSRIS ENNYERIIRF LCEEKSMSEA IRAFRSMIDD HELSPSLEIY NSIIHSYADD GKFEEAMFYL NHMKENGLLP 201: ITETYDGLIE AYGKWKMYDE IVLCLKRMES DGCVRDHVTY NLLIREFSRG GLLKRMEQMY QSLMSRKMTL EPSTLLSMLE AYAEFGLIEK MEETCNKIIR 301: FGISLDEGLV RKLANVYIEN LMFSRLDDLG RGISASRTRR TELAWCLRLL CHARLVSRKG LDYVVKEMEE ARVPWNTTFA NIALLAYSKM GDFTSIELLL 401: SELRIKHVKL DLVTVGIVFD LSEARFDGTG VFMTWKKIGF LDKPVEMKTD PLVHAAFGKG QFLRSCEEVK NQSLGTRDGE SKSWTYQYLM ELVVKNQKTV 501: P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)