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AT4G14110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : COP9 signalosome, subunit CSN8
Curator
Summary (TAIR10)
Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex.
Computational
Description (TAIR10)
CONSTITUTIVE PHOTOMORPHOGENIC 9 (COP9); CONTAINS InterPro DOMAIN/s: COP9 signalosome, subunit CSN8 (InterPro:IPR019280); Has 218 Blast hits to 218 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 17; Plants - 54; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
DNASU:827049eggNOG:ENOG410XW9NeggNOG:KOG4414EMBL:AF395067EnsemblPlants:AT4G14110EnsemblPlants:AT4G14110.1entrez:827049
ExpressionAtlas:Q548D1Gene3D:1.10.10.10GeneID:827049Gramene:AT4G14110.1hmmpanther:PTHR13339InterPro:IPR011991InterPro:IPR033205
InterPro:IPR033464KEGG:ath:AT4G14110KO:K12181OMA:RIGQKLWPANTHER:PTHR13339PaxDb:Q548D1Pfam:P43255
Pfam:PF10075PhylomeDB:Q548D1PRIDE:Q548D1ProteinModelPortal:Q548D1RefSeq:NP_193147.1SMR:Q548D1STRING:3702.AT4G14110.1
TAIR:AT4G14110tair10-symbols:COP9tair10-symbols:CSN8tair10-symbols:EMB143tair10-symbols:FUS7UniGene:At.4252UniProt:P43255
UniProt:Q548D1
Coordinates (TAIR10) chr4:-:8133049..8134867
Molecular Weight (calculated) 22547.80 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.21
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)