suba logo
AT4G14080.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 48 (MEE48); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: pollen exine formation, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G23770.1); Has 2783 Blast hits to 2708 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2773; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G14080-MONOMERCAZy:CBM43CAZy:GH17EC:3.2.1.39eggNOG:ENOG410IV95eggNOG:ENOG41113FYEMBL:AL161538
EMBL:AY099580EMBL:BT002150EMBL:CP002687EMBL:X70409EMBL:Z97335EnsemblPlants:AT4G14080EnsemblPlants:AT4G14080.1
entrez:827044Gene3D:3.20.20.80GeneID:827044Genevisible:Q06915GO:GO:0005975GO:GO:0006952GO:GO:0009793
GO:GO:0010584GO:GO:0042973Gramene:AT4G14080.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF122HOGENOM:HOG000238220InParanoid:Q06915
InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT4G14080OMA:LRMACAQPaxDb:Q06915
Pfam:PF00332Pfam:PF07983Pfam:Q06915PhylomeDB:Q06915PIR:S31906PRIDE:Q06915PRO:PR:Q06915
PROSITE:PS00587ProteinModelPortal:Q06915Proteomes:UP000006548RefSeq:NP_193144.1scanprosite:PS00587SMART:SM00768SMR:Q06915
STRING:3702.AT4G14080.1SUPFAM:SSF51445TAIR:AT4G14080tair10-symbols:MEE48UniGene:At.162UniProt:Q06915
Coordinates (TAIR10) chr4:-:8118697..8120292
Molecular Weight (calculated) 53474.90 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.21
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLAFFLFT ILVFSSSCCS ATRFQGHRYM QRKTMLDLAS KIGINYGRRG NNLPSPYQSI NFIKSIKAGH VKLYDADPES LTLLSQTNLY VTITVPNHQI
101: TALSSNQTIA DEWVRTNILP YYPQTQIRFV LVGNEILSYN SGNVSVNLVP AMRKIVNSLR LHGIHNIKVG TPLAMDSLRS SFPPSNGTFR EEITGPVMLP
201: LLKFLNGTNS YFFLNVHPYF RWSRNPMNTS LDFALFQGHS TYTDPQTGLV YRNLLDQMLD SVLFAMTKLG YPHMRLAISE TGWPNFGDID ETGANILNAA
301: TYNRNLIKKM SASPPIGTPS RPGLPIPTFV FSLFNENQKS GSGTQRHWGI LHPDGSPIYD VDFTGQTPLT GFNPLPKPTN NVPYKGQVWC VPVEGANETE
401: LEETLRMACA QSNTTCAALA PGRECYEPVS IYWHASYALN SYWAQFRNQS IQCFFNGLAH ETTTNPGNDR CKFPSVTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)