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AT4G14020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.960
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rapid alkalinization factor (RALF) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rapid alkalinization factor (RALF) family protein; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW6XeggNOG:ENOG411057NEMBL:AK227416EMBL:AL161537EMBL:BT004746EMBL:CP002687EMBL:Z97335
EnsemblPlants:AT4G14020EnsemblPlants:AT4G14020.1entrez:827038GeneID:827038Gramene:AT4G14020.1hmmpanther:PTHR33136hmmpanther:PTHR33136:SF3
HOGENOM:HOG000114089InterPro:IPR008801KEGG:ath:AT4G14020OMA:WVKERYEPfam:PF05498PIR:C71401Proteomes:UP000006548
RefSeq:NP_567419.1TAIR:AT4G14020UniGene:At.33313UniProt:O23263
Coordinates (TAIR10) chr4:-:8095370..8095705
Molecular Weight (calculated) 12790.70 Da
IEP (calculated) 6.68
GRAVY (calculated) -1.22
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYYTFTEND EERVSRNHHV NNTWVKERYE SDEEDGEVNK LILKEDEETK DMVTSPSGER MMLTSKVRYL TYGALKHDTA ASAASGGGGR ALPHPSNKYN
101: RGHPKYYRCR G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)