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AT4G14010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 32
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 32 (RALFL32); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4AUeggNOG:ENOG41119R7EMBL:AK227441EMBL:AL161537EMBL:AY088508EMBL:BT024787EMBL:CP002687
EMBL:Z97335EnsemblPlants:AT4G14010EnsemblPlants:AT4G14010.1entrez:827037GeneID:827037Genevisible:O23262GO:GO:0004871
GO:GO:0005179GO:GO:0005622GO:GO:0007267GO:GO:0009506GO:GO:0019722GO:GO:0048046Gramene:AT4G14010.1
hmmpanther:PTHR33136hmmpanther:PTHR33136:SF3HOGENOM:HOG000237626InParanoid:O23262InterPro:IPR008801KEGG:ath:AT4G14010OMA:IMESWSS
PaxDb:O23262Pfam:O23262Pfam:PF05498PhylomeDB:O23262PIR:B71401PRIDE:O23262PRO:PR:O23262
Proteomes:UP000006548RefSeq:NP_567418.1STRING:3702.AT4G14010.1TAIR:AT4G14010tair10-symbols:RALFL32UniGene:At.33314UniProt:O23262
Coordinates (TAIR10) chr4:-:8093010..8093363
Molecular Weight (calculated) 12919.30 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.43
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIKPSRIFS TITIFFLCLL LAHVTSKASS SSLCNGSVAE CSSMVETEEM SVIMESWSSQ RLTEEQAHKL SYGALRRNQP ACDGGKRGES YSTQCLPPPS
101: NPYSRGCSKH YRCGRDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)