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AT4G13980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : winged-helix DNA-binding transcription factor family protein
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
AT-HSFA5; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5169eggNOG:KOG0627EMBL:AK221877EMBL:AL161537EMBL:AY039528EMBL:BT001056EMBL:CP002687
EMBL:Z97335EnsemblPlants:AT4G13980EnsemblPlants:AT4G13980.1entrez:827033Gene3D:1.10.10.10GeneID:827033Genevisible:Q94BZ5
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0043565Gramene:AT4G13980.1hmmpanther:PTHR10015
hmmpanther:PTHR10015:SF157HOGENOM:HOG000237979InParanoid:Q94BZ5InterPro:IPR000232InterPro:IPR011991InterPro:IPR027725KEGG:ath:AT4G13980
KO:K09419ncoils:CoilOMA:HQDFSNKPANTHER:PTHR10015PaxDb:Q94BZ5Pfam:PF00447Pfam:Q94BZ5
PhylomeDB:Q94BZ5PIR:G71400PRIDE:Q94BZ5PRINTS:PR00056PRO:PR:Q94BZ5PROSITE:PS00434ProteinModelPortal:Q94BZ5
Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511Reactome:R-ATH-3371568Reactome:R-ATH-3371571RefSeq:NP_567415.1scanprosite:PS00434
SMART:SM00415SMR:Q94BZ5STRING:3702.AT4G13980.1SUPFAM:SSF46785TAIR:AT4G13980tair10-symbols:AT-HSFA5tair10-symbols:HSFA5
UniGene:At.4244UniProt:Q94BZ5
Coordinates (TAIR10) chr4:-:8077519..8079247
Molecular Weight (calculated) 52357.90 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.83
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)