AT4G13960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G52650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8060681..8062231 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49479.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDHVSSLPDE VLYHILSFLT TKEAALTSIL SKRWRNLFTF VPNLDIDDSV FLHPQEGKED RYEIQKSFMK FVDRVLALQG NSPIKKLSLK LRTGFDSHRV 101: DGWISNALAR GVTELDLLII LNLVTLKLNS VRVDWLAAGD IFLPMLKTLV LHSVRLCVDN VNWGGKDVNV SNASLKILTV NYNICLGTFS VDTPSLVYFC 201: FTEYVAIDYP VVIMQNLFEA RISLLVTQDQ IERARAPNID WVEDDVVLRL VNMEKLIKGI RNVQYMYLSP NTLEVLSLCC ESMPVFNNLK SLTLKSHKSR 301: GWQAMPVLLR NCPHLETLVL EGILHHVTDK CGYACDCVSR EEKGCSLTSC PVKVLEIKGF RGTIKEMHMI KHFVNYFPCL METNIYIEES GPPKLRVPQV 401: CEFIAEMMEH YGKSSSFNVQ LLVGGYLYKK WTAQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)