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AT4G13850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glycine-rich RNA-binding protein 2
Curator
Summary (TAIR10)
Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.
Computational
Description (TAIR10)
glycine-rich RNA-binding protein 2 (GR-RBP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 1220 Blast hits to 1220 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12316eggNOG:COG0724eggNOG:KOG0118EMBL:AJ002892
EMBL:AL035528EMBL:AL161537EMBL:AY072361EMBL:AY085621
EMBL:BT002197EMBL:CP002687EMBL:X69377EMBL:Z18189
EnsemblPlants:AT4G13850EnsemblPlants:AT4G13850.1entrez:827019ExpressionAtlas:Q9SVM8
Gene3D:3.30.70.330GeneID:827019Genevisible:Q9SVM8GO:GO:0001072
GO:GO:0003690GO:GO:0003697GO:GO:0003723GO:GO:0005507
GO:GO:0005524GO:GO:0005739GO:GO:0006970GO:GO:0009409
GO:GO:0009414GO:GO:0009631GO:GO:0009651GO:GO:0009845
GO:GO:0031564hmmpanther:PTHR24012HOGENOM:HOG000276232InParanoid:Q9SVM8
IntAct:Q9SVM8InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9SVM8
OMA:KYDNVEDPaxDb:Q9SVM8Pfam:PF00076Pfam:Q9SVM8
Pfscan:PS50102PhylomeDB:Q9SVM8PIR:S31443PIR:T05254
PRIDE:Q9SVM8PRO:PR:Q9SVM8PROSITE:PS50102ProteinModelPortal:Q9SVM8
Proteomes:UP000006548RefSeq:NP_193121.1SMART:SM00360SMR:Q9SVM8
STRING:3702.AT4G13850.1SUPFAM:SSF54928SwissPalm:Q9SVM8TAIR:AT4G13850
tair10-symbols:ATGRP2tair10-symbols:GR-RBP2tair10-symbols:GRP2UniGene:At.15585
UniGene:At.2UniProt:Q9SVM8
Coordinates (TAIR10) chr4:+:8021314..8022065
Molecular Weight (calculated) 15703.30 Da
IEP (calculated) 7.51
GRAVY (calculated) -0.29
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGGG YGGGGGGYGG GGDGGGGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)