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AT4G13800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF803)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF803); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT3G23870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNR8eggNOG:KOG2922EMBL:AL035528EMBL:AL161537EMBL:AY088039EMBL:BT033091EMBL:CP002687
EnsemblPlants:AT4G13800EnsemblPlants:AT4G13800.1entrez:827014GeneID:827014Genevisible:B3LFA3GO:GO:0005769GO:GO:0005886
GO:GO:0015095GO:GO:0015693GO:GO:0016021Gramene:AT4G13800.1hmmpanther:PTHR12570hmmpanther:PTHR12570:SF20HOGENOM:HOG000203962
InParanoid:B3LFA3InterPro:IPR008521iPTMnet:B3LFA3KEGG:ath:AT4G13800OMA:ANNGHTRPANTHER:PTHR12570PaxDb:B3LFA3
Pfam:B3LFA3Pfam:PF05653PhylomeDB:B3LFA3PIR:T05249PRIDE:B3LFA3PRO:PR:B3LFA3ProteinModelPortal:B3LFA3
Proteomes:UP000006548RefSeq:NP_567411.1SUPFAM:0043518TAIR:AT4G13800TMHMM:TMhelixUniGene:At.33337UniProt:B3LFA3
Coordinates (TAIR10) chr4:-:8002129..8003858
Molecular Weight (calculated) 36602.30 Da
IEP (calculated) 8.55
GRAVY (calculated) 0.64
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEMSPDNIH GVILAVSSSI FIGSSFIIKK KGLKKAGVSG ARAGEGGYGY LYEPWWWAGM ITMIVGEIAN FAAYAFAPAI LVTPLGALSI IFSAVLAHFI
101: LEEKLHMFGI LGCVLCVVGS TTIVLHAPHE QGIESVKQVW HLATEPGFLA YSAVVLVVVL ALIFYYEPRY GKTHMIVYVG ICSLMGSLTV MSVKAVAIAI
201: KLTFSGMNQF KYFHAWIFII VVTICCILQI NYLNKALDNF NTAVISPVYY VMFTTFTILA SMIMFKDWAS QSGLQIATEL CGFVTILSGT FLLHKTKDMG
301: NSTSLRGSTS HSPRDTPVFI NSGSSRSSNS TRPAIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)