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AT4G13780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G40660.1); Has 17985 Blast hits to 17920 proteins in 2983 species: Archae - 503; Bacteria - 10276; Metazoa - 591; Fungi - 596; Plants - 228; Viruses - 3; Other Eukaryotes - 5788 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13780-MONOMERBioGrid:12309EC:6.1.1.10eggNOG:COG0073eggNOG:COG0143eggNOG:ENOG410JTYUeggNOG:KOG1247
eggNOG:KOG2241EMBL:AL035528EMBL:AL161537EMBL:AY064009EMBL:AY091454EMBL:CP002687EnsemblPlants:AT4G13780
EnsemblPlants:AT4G13780.1entrez:827012Gene3D:1.10.730.10Gene3D:2.20.28.20Gene3D:2.40.50.140Gene3D:3.40.50.620GeneID:827012
Genevisible:Q9SVN5GO:GO:0000049GO:GO:0004825GO:GO:0005524GO:GO:0005829GO:GO:0006431GO:GO:0046686
Gramene:AT4G13780.1gramene_pathway:6.1.1.10gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00098hmmpanther:PTHR11946hmmpanther:PTHR11946:SF86HOGENOM:HOG000200402
InParanoid:Q9SVN5InterPro:IPR001412InterPro:IPR002547InterPro:IPR009080InterPro:IPR012340InterPro:IPR014729InterPro:IPR014758
InterPro:IPR015413InterPro:IPR023458InterPro:IPR029038KEGG:00450+6.1.1.10KEGG:00970+6.1.1.10KEGG:ath:AT4G13780KO:K01874
OMA:AVHSEVYPaxDb:Q9SVN5Pfam:PF01588Pfam:PF09334Pfam:Q9SVN5Pfscan:PS50886PhylomeDB:Q9SVN5
PIR:T05247PRIDE:Q9SVN5PRINTS:PR01041PRO:PR:Q9SVN5PROSITE:PS00178PROSITE:PS50886ProteinModelPortal:Q9SVN5
Proteomes:UP000006548RefSeq:NP_193114.1scanprosite:PS00178SMR:Q9SVN5STRING:3702.AT4G13780.1SUPFAM:SSF47323SUPFAM:SSF50249
SUPFAM:SSF52374SUPFAM:SSF57770TAIR:AT4G13780TIGRfam:TIGR00398TIGRFAMs:TIGR00398UniGene:At.27407UniProt:Q9SVN5
Coordinates (TAIR10) chr4:-:7993366..7998433
Molecular Weight (calculated) 89858.30 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.43
Length 797 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDGKSSPK LPIPGKRNIL ITSALPYVNN VPHLGNIIGC VLSADVYARY CRLRGYNAIY ICGTDEYGTA TETKALEENC TPKEICDKYH AIHKEVYDWF
101: GISFDKFGRT STPEQTEVCQ AIFNKLWDNK WLSENTMQQL YCDTCKKFLA DRLVEGSCPF EGCNYDSARG DQCEKCGKLL NPTELKDPKC KVCQNTPRIR
201: DTDHLFIELP LLKDRLEAYI KKTSVTGSWS QNAIQTTNAW LRDGLRQRCI TRDLKWGVPV PHEKYKDKVF YVWFDAPIGY VSITSCYTSE WEKWWKNPEN
301: VELYQFMGKD NVPFHTVMFP STQLGTEENW TLMKTISVTE YLNYEDGKFS KSKGVGVFGN DVKDTNIPVE VWRYYLLTNR PEVSDTSFSW TDLQAKLNGE
401: LLSNLGNFVN RVLSFIAKPD NAGYGSVIPD AHDAESHSLT KSLAEKVEKF VAEYVEAMEK VKLKQGLKTA MLISSEGNYY LQASQFWKLY KEDKPLCAVV
501: IRTAAGLVHL LAQLLEPFMP SFSCEVFKQL NLPPQFSLSD ERGEVLLASR PWDILPPSHR IGTPQPLFKE LENDEVARYR EKFAGSQSDR RARDEAANLA
601: DQLNKTKLSD AKKQKASSKG GGKPKPQPAA DREITMARLD IRVGKIVKAE KHPKADALYV EEIDVGGGEI RTVVSGLVKY IPLEEMQNRM VCVLCNLKPA
701: KMRDIVSQAM VLAASSSDGS KVELVEPPKT ANIGERVTFP GFEGEPDDVL NPKKKVWETL LVDLNTKENL VACYKDVPFT TSAGVCKVSS ISNGTIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)