suba logo
AT4G13640.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unfertilized embryo sac 16 (UNE16); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G24120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJU8eggNOG:ENOG410YGB1EMBL:AK226443EMBL:AY087771EMBL:CP002687EnsemblPlants:AT4G13640EnsemblPlants:AT4G13640.1
entrez:826998ExpressionAtlas:Q8LAJ7Gene3D:1.10.10.60GeneID:826998GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT4G13640.1hmmpanther:PTHR31499hmmpanther:PTHR31499:SF6InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017930InterPro:IPR025756ncoils:CoilPfam:PF00249Pfam:PF14379Pfscan:PS51294PhylomeDB:Q8LAJ7
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_567408.1SMR:Q8LAJ7STRING:3702.AT4G13640.2SUPFAM:SSF46689TAIR:AT4G13640
tair10-symbols:UNE16TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.22199UniProt:Q8LAJ7
Coordinates (TAIR10) chr4:-:7936864..7938497
Molecular Weight (calculated) 31724.70 Da
IEP (calculated) 7.09
GRAVY (calculated) -0.35
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSAIRSSLP LDGSLGDYSD GTNLPIDACL VLTTDPKPRL RWTSELHERF VDAVTQLGGP DKATPKTIMR TMGVKGLTLY HLKSHLQKFR LGRQSCKESI
101: DNSKDVSCVA ESQDTGSSST SSLRLAAQEQ NESYQVTEAL RAQMEVQRRL HEQLEVQRRL QLRIEAQGKY LQSILEKACK AIEEQAVAFA GLEAAREELS
201: ELAIKASITN GCQGTTSTFD TTKMMIPSLS ELAVAIEHKN NCSAESSLTS STVGSPVSAA LMKKRQRGVF GNGDSVVVGH DAGWVMPSSS IG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)