AT4G13610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA (cytosine-5-)-methyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 57 (MEE57); FUNCTIONS IN: DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA methylation, embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA methyltransferase 2 (TAIR:AT4G14140.1); Has 6324 Blast hits to 5616 proteins in 1348 species: Archae - 209; Bacteria - 4007; Metazoa - 304; Fungi - 185; Plants - 335; Viruses - 79; Other Eukaryotes - 1205 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7915022..7921231 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 160221.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1404 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKTKAGKQKK RSVDSDDDVS RERRPKRATS GTNFKEKSLR FSEKYETVEA KKEQIVGDDE KEEKGVRFQS FGRVENWTIS GYEDGSPVIW ISTVIADYDC 0101: RKPSKKYKKL YDYFFEKACA CVEVCKNLST NPDTSLKELL AAVVRSMNGR KIFSSGGVIQ EFVISQGEFI YNQLAGLDET SKNHETKFVD NRVLVSLRDE 0201: SRKIHKAFSN VALRIDESKV LTSDQLMDGG EDEDLKYAKL LQEEEHMKSM DRSRNKRSST TSAPNKFYIK INEDEIAHDY PLPSYYKNTK DETDELVLFN 0301: AGYAVDARNL PCRTLHNWAL YNSDLMLISL EFLPMKPCAD IDVTYLGQIK EWKIDFGEDM IFVLLRTDMA WYRLGKPSEQ YAPWFEPILK TVRIGTSILA 0401: LLKNETRMAK LSYTDVIKRL CGLEENDQAY ISSTFFDVER YVIVHGQIIL QFLTECPDEY IKRCPFVTGL ASKMQDRHHT KWIIKKKRKM LQKGENLNLR 0501: RGKAPKVSKM KAMQATTTRL INRIWGEFYS IYSPEDPLEE IGAEEEFEEV EDVEEEDENE EEDTIQKAIE VQKADTLKKI RGSCKEMEIR WEGEILGETC 0601: AGEPLYGQAL VGGRKMDVGG AVILEVDDQG ETPLIYFVEY MFESSDNSKK LHGKLLQRGS ETVLGTAANE RELFLTNECL TVQLKDIKGT VSFEIRSRPW 0701: GHQYKKEHMA ADKLDRARAE ERKAKDLPIE YYCKSLYSPE KGGFFSLPRS DMGLGSGFCS SCKIRENEEE RSKTKLNDSK TRFLSNGIKY SVGDFVYQIP 0801: NYLSKDRGKR RPVFKYGRNV GLRAFVVCQI LDIVDLKEPK KGNTTSFEVK VRRFYRPDDV SAEEAYASDI QEVYYSEDTY ILPPEAIKGK CEVMKKTDMP 0901: LCREYPILDH VYFCDRFYDS SNGCLKKLPY NMMLKFSTIK DDTLLREKKT ETGSAMLLKP DEVPKGKRLA TLDIFAGCGG LSYGLEKAGV SDTKWAIEYE 1001: EPAAQAFKQN HPKTTVFVDN CNVILRISWL RLLINDRAIM EKCGDVDDCI STTEAAELAT KLDENQKSTL PLPGQVDFIS GGPPCQGFSR LNRFSDGSWS 1101: KNQCQMILAF LSFADYFRPK YFLLENVKTF VSFNEGHTFH LTVASLLEMG YQVRFGLLEA GAYGISQPRK RAFIWAAAPN EVLPEWPEPM HVFNNPGFKI 1201: PLSQGLHYAA VQSTKFGAPF RSITVRDAIG DLPPIESGES KINKEEMRGS MTVLTDHICK KMNELNLIRC KKIPKTPGAD WRDLPDEHVN LSNGIVKNIV 1301: PNLLNKAKDH NGYKGLYGRL DWHGNLPTCI TNLQPMGLVG MCFHPDQDRI ISVRECARSQ GFPDSYKFSG NIKDKHRQVG NAVPPPLAFA LGRKLKEALH 1401: LRNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)