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AT4G13600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.479
endoplasmic reticulum 0.335
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding X8 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding X8 domain superfamily protein; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 3 (TAIR:AT1G18650.1); Has 487 Blast hits to 485 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 8; Plants - 474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZMUeggNOG:ENOG410YPJPEMBL:CP002687EnsemblPlants:AT4G13600EnsemblPlants:AT4G13600.1entrez:826993GeneID:826993
Gramene:AT4G13600.1hmmpanther:PTHR32227InParanoid:F4JT39InterPro:IPR012946KEGG:ath:AT4G13600OMA:GSCNFAGPaxDb:F4JT39
Pfam:PF07983PRIDE:F4JT39ProteinModelPortal:F4JT39Proteomes:UP000006548RefSeq:NP_193096.5SMART:SM00768SMR:F4JT39
STRING:3702.AT4G13600.1TAIR:AT4G13600TMHMM:TMhelixUniGene:At.54309UniProt:F4JT39
Coordinates (TAIR10) chr4:-:7911179..7912892
Molecular Weight (calculated) 24601.40 Da
IEP (calculated) 9.49
GRAVY (calculated) 0.02
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRKEKTKQK QKRVREVRLH TQTLHSHSFL SFLSYHFPMA LCLQTLSFLL LLLFRSSAAM WCVARFDVTS QALQAALDYA CAAGADCAPI QPNGLCFLPN
101: TVQAHASYAF NSYFQRAAMA PGSCNFAGTS TIAKTDPSYG SCVYPNSVRN AGGSASTTTV GGTPSTTVGN SPMTTLRPPS GTTTSPFGIG GGGLNPQGTT
201: TTTNTDESGS YIINKSTVSI ALFVALLLWF I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)