suba logo
AT4G13580.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance-responsive (dirigent-like protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT3G24020.1); Has 723 Blast hits to 722 proteins in 40 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 719; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:826991eggNOG:ENOG410IV8FeggNOG:ENOG410YCDBEMBL:AL049656EMBL:AL161536EMBL:AY081267EMBL:AY114553
EMBL:CP002687EnsemblPlants:AT4G13580EnsemblPlants:AT4G13580.1entrez:826991GeneID:826991Genevisible:Q9T0H8GO:GO:0048046
Gramene:AT4G13580.1hmmpanther:PTHR21495hmmpanther:PTHR21495:SF39HOGENOM:HOG000237511InParanoid:Q9T0H8InterPro:IPR004265KEGG:ath:AT4G13580
OMA:AKQIGFVPaxDb:Q9T0H8Pfam:PF03018Pfam:Q9T0H8PhylomeDB:Q9T0H8PIR:T06660PRO:PR:Q9T0H8
ProteinModelPortal:Q9T0H8Proteomes:UP000006548RefSeq:NP_193094.1SMR:Q9T0H8STRING:3702.AT4G13580.1TAIR:AT4G13580TMHMM:TMhelix
UniGene:At.33360UniGene:At.68238UniProt:Q9T0H8
Coordinates (TAIR10) chr4:+:7900427..7901161
Molecular Weight (calculated) 25412.70 Da
IEP (calculated) 4.82
GRAVY (calculated) 0.21
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKQSPFSLL TSIFLIAALF TATTALDPAP EDPIFELYMH DILGGSSPTA RPITGLLGNI YNGQVPFAKQ IGFVPPQNGV AIPNANGAMP TVNGINGIPL
101: GTGLSGTAFS GQNLNGIQTQ LGPDGLSLGF GTITVIDDII TSGPDLGSQP LGKAQGVYVA SSADGSTQMM AFTAMLEGGE YNDNLNFYGI YRIGSAMSHL
201: SVTGGTGRFK NACGFAEVRP LIPAGQHFVD GAEMLLRIIV HLKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)