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AT4G13510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26748395 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21413151 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17869214 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ammonium transporter 1;1
Curator
Summary (TAIR10)
Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.
Computational
Description (TAIR10)
ammonium transporter 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport, protein polymerization, response to karrikin; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;3 (TAIR:AT3G24300.1); Has 11619 Blast hits to 11599 proteins in 2072 species: Archae - 224; Bacteria - 4688; Metazoa - 462; Fungi - 431; Plants - 505; Viruses - 0; Other Eukaryotes - 5309 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13510-MONOMERBioCyc:MetaCyc:AT4G13510-MONOMERBioGrid:12280eggNOG:COG0004eggNOG:KOG0682EMBL:AL049656EMBL:AL161536
EMBL:AY037219EMBL:AY113167EMBL:CP002687EMBL:X75879EnsemblPlants:AT4G13510EnsemblPlants:AT4G13510.1entrez:826983
Gene3D:1.10.3430.10GeneID:826983Genevisible:P54144GO:GO:0005634GO:GO:0005886GO:GO:0005887GO:GO:0006995
GO:GO:0008519GO:GO:0009506GO:GO:0009737GO:GO:0010311GO:GO:0015695GO:GO:0015696GO:GO:0019740
GO:GO:0051258GO:GO:0080167GO:GO:0080181Gramene:AT4G13510.1gramene_pathway:PWY-5986hmmpanther:PTHR11730hmmpanther:PTHR11730:SF39
HOGENOM:HOG000017735InParanoid:P54144InterPro:IPR001905InterPro:IPR018047InterPro:IPR024041InterPro:IPR029020iPTMnet:P54144
KEGG:ath:AT4G13510KO:K03320MINT:MINT-8061187OMA:SIDTTWVPANTHER:PTHR11730PaxDb:P54144Pfam:P54144
Pfam:PF00909PhylomeDB:P54144PIR:T06653PRIDE:P54144PRO:PR:P54144PROSITE:PS01219ProteinModelPortal:P54144
Proteomes:UP000006548RefSeq:NP_193087.1SABIO-RK:P54144scanprosite:PS01219SMR:P54144STRING:3702.AT4G13510.1SUPFAM:0044218
SUPFAM:SSF111352TAIR:AT4G13510tair10-symbols:AMT1;1tair10-symbols:ATAMT1tair10-symbols:ATAMT1;1TCDB:1.A.11.2.1TIGRfam:TIGR00836
TIGRFAMs:TIGR00836TMHMM:TMhelixUniGene:At.23790UniGene:At.33367UniGene:At.49725UniProt:P54144
Coordinates (TAIR10) chr4:+:7858220..7859725
Molecular Weight (calculated) 53579.60 Da
IEP (calculated) 7.47
GRAVY (calculated) 0.36
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCSATDLAV LLGPNATAAA NYICGQLGDV NNKFIDTAFA IDNTYLLFSA YLVFSMQLGF AMLCAGSVRA KNTMNIMLTN VLDAAAGGLF YYLFGYAFAF
101: GSPSNGFIGK HYFGLKDIPT ASADYSNFLY QWAFAIAAAG ITSGSIAERT QFVAYLIYSS FLTGFVYPVV SHWFWSVDGW ASPFRTDGDL LFSTGAIDFA
201: GSGVVHMVGG IAGLWGALIE GPRLGRFDNG GRAIALRGHS ASLVVLGTFL LWFGWYGFNP GSFNKILVTY ETGTYNGQWS AVGRTAVTTT LAGCTAALTT
301: LFGKRLLSGH WNVTDVCNGL LGGFAAITGG CSVVEPWAAI ICGFVAALVL LGCNKLAEKL KYDDPLEAAQ LHGGCGAWGL IFTALFAQEK YLNQIYGNKP
401: GRPHGLFMGG GGKLLGAQLI QIIVITGWVS ATMGTLFFIL KKMKLLRISS EDEMAGMDMT RHGGFAYMYF DDDESHKAIQ LRRVEPRSPS PSGANTTPTP
501: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)