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AT4G13380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 56 (MEE56); FUNCTIONS IN: metal ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G57780.1); Has 1906 Blast hits to 1384 proteins in 227 species: Archae - 17; Bacteria - 216; Metazoa - 257; Fungi - 98; Plants - 252; Viruses - 8; Other Eukaryotes - 1058 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AL049608EMBL:AL161536
EMBL:CP002687EnsemblPlants:AT4G13380EnsemblPlants:AT4G13380.1entrez:826969
GeneID:826969GO:GO:0009793GO:GO:0030001GO:GO:0046872
Gramene:AT4G13380.1hmmpanther:PTHR22814HOGENOM:HOG000152576InterPro:IPR006121
KEGG:ath:AT4G13380OMA:NEANEQEPfam:PF00403PhylomeDB:Q9T0K9
PIR:T06295Proteomes:UP000006548RefSeq:NP_193074.1SMR:Q9T0K9
STRING:3702.AT4G13380.1SUPFAM:SSF55008TAIR:AT4G13380tair10-symbols:MEE56
UniGene:At.54303UniProt:Q9T0K9
Coordinates (TAIR10) chr4:+:7781782..7782553
Molecular Weight (calculated) 22697.90 Da
IEP (calculated) 4.60
GRAVY (calculated) -1.08
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTGNFNLEK LLKNLKKKTG KKAEILTMNE KVEKEDVVQN EANEQETVTK KNEEGDIVDK KDETPEVEEK IDKPETSTRK LEIHIAFLSE KYEADIGKVI
101: SKFEGVKTCK VDVENKKVVI TGDFDEEKLW KELEEKMRKR IVKMEKEKKD DEPITKDEEN EIDRGVYMNP SSDDEKEMAR WMMFSDENPN ACSIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)