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AT4G13360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT3G24360.1); Has 20226 Blast hits to 20218 proteins in 1812 species: Archae - 355; Bacteria - 13945; Metazoa - 843; Fungi - 613; Plants - 486; Viruses - 0; Other Eukaryotes - 3984 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13360-MONOMERBioGrid:12264EC:3.1.2.-eggNOG:COG1024eggNOG:KOG1684EMBL:AF380642EMBL:AL049608
EMBL:AL161536EMBL:AY057737EMBL:AY084255EMBL:CP002687EnsemblPlants:AT4G13360EnsemblPlants:AT4G13360.1entrez:826967
Gene3D:3.90.226.10GeneID:826967Genevisible:Q9T0K7GO:GO:0005739GO:GO:0005829GO:GO:0016787GO:GO:0016836
Gramene:AT4G13360.1gramene_pathway:3.1.2.4gramene_pathway:PWY-3941gramene_pathway:VALDEG-PWYhmmpanther:PTHR11941hmmpanther:PTHR11941:SF47HOGENOM:HOG000217005
InParanoid:Q9T0K7InterPro:IPR029045InterPro:IPR032259iPTMnet:Q9T0K7KEGG:ath:AT4G13360OMA:RNDFVEGPaxDb:Q9T0K7
Pfam:PF16113Pfam:Q9T0K7PIR:T06293PRIDE:Q9T0K7PRO:PR:Q9T0K7ProteinModelPortal:Q9T0K7Proteomes:UP000006548
RefSeq:NP_193072.2SMR:Q9T0K7STRING:3702.AT4G13360.1SUPFAM:SSF52096TAIR:AT4G13360UniGene:At.33381UniGene:At.48855
UniProt:Q9T0K7
Coordinates (TAIR10) chr4:+:7775133..7777701
Molecular Weight (calculated) 46253.30 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.18
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MIIIKTLSHR IFFPKFSQTF SSQFHQTLRF SISDRRKFSA MAGAGVDDFV KGNVFPNGVA LITLDRTKAL NAMNLDMDIK YKSFLDEWES DPRVKCVIVE
101: GSTSRAFCAG MDIKGVAAEI QKDKNTPLVQ KVFTAEYTLI CAIAAYKKPY ISLMDGITMG FGLGLSGHGR YRVITERTVL AMPENGIGLF PDVGFSYIAA
201: HSPGGGSVGA YLGLTGKRIS APSDALFVGL GTHYVPSEKL ASLKEAILSA NLSEDPNQDI QATLSKYSSN PESEAHLKSL LPHIESAFSS NKSIKETIEE
301: LKKYQQSTES SVVEWANEAL KGLEKGAPFS LYLTQKYFSN VACAKSKPEN ELATLNGVMK TEYRIALRSA LRGDFAEGVR AVLIDKDQNP KWNPTSIEEV
401: DENEVEALFK PLSPEVEELK V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)