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AT4G13345.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.493
vacuole 0.432
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111N3CeggNOG:KOG2592EMBL:AY059783EMBL:AY117270EMBL:CP002687EnsemblPlants:AT4G13345EnsemblPlants:AT4G13345.1
entrez:826965ExpressionAtlas:Q93YS8GeneID:826965GO:GO:0009793GO:GO:0015194GO:GO:0015825GO:GO:0016021
Gramene:AT4G13345.1hmmpanther:PTHR10383HOGENOM:HOG000029481IntAct:Q93YS8InterPro:IPR005016KEGG:ath:AT4G13345OMA:KINAGFL
PANTHER:PTHR10383Pfam:PF03348PhylomeDB:Q93YS8Proteomes:UP000006548RefSeq:NP_567403.1STRING:3702.AT4G13345.1TAIR:AT4G13345
tair10-symbols:MEE55TMHMM:TMhelixUniGene:At.26630UniProt:Q93YS8
Coordinates (TAIR10) chr4:+:7767292..7769426
Molecular Weight (calculated) 44980.30 Da
IEP (calculated) 7.85
GRAVY (calculated) 0.48
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: METGTSIDNT GYEGIKNGSW FIQFRNGCNP WMARYVYGLI FLLANLLAWA LRDYGRGALT EMRKFKNCKE GGDCLGTEGV LRVSFGCFLF YFIMFLSTVG
101: TSKTHSSRDK WHSGWWFAKL FMLLGLTIFP FLLPSSIIQF YGEIAHFGAG VFLLIQLISI ISFITWLNEC FQAQKDAERC HVHVMLLATT AYTVCILGVI
201: LMYIWYVPEP SCLLNIFFIT WTLFLIQLMT SISLHPKINA GFLTPALMGL YVVFICWCAI RSEPVGETCN RKAEGSSRTD WLTIISFVVA LLAMVIATFS
301: TGVDSQCFQF RKDENHEEDA IPYGYGFFHF VFATGAMYFA MLLVGWNIHH SMKKWTIDVG WTSTWVRIVN EWLAVGVYIW MLVAPMVLKS RQTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)