suba logo
AT4G13260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Flavin-binding monooxygenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YUCCA2 (YUC2); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G25620.2); Has 8906 Blast hits to 8890 proteins in 1145 species: Archae - 19; Bacteria - 4493; Metazoa - 721; Fungi - 1451; Plants - 645; Viruses - 0; Other Eukaryotes - 1577 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13260-MONOMERBioCyc:MetaCyc:AT4G13260-MONOMERBRENDA:1.14.13.168EC:1.14.13.168eggNOG:COG2072eggNOG:KOG1399EMBL:AL049751
EMBL:AL161536EMBL:AY057103EMBL:AY133691EMBL:CP002687EnsemblPlants:AT4G13260EnsemblPlants:AT4G13260.1entrez:826956
Gene3D:3.40.50.720Gene3D:3.50.50.60GeneID:826956Genevisible:Q9SVQ1GO:GO:0004497GO:GO:0004499GO:GO:0009851
GO:GO:0050660GO:GO:0050661GO:GO:0055114Gramene:AT4G13260.1gramene_pathway:2.1.1.-gramene_pathway:PWY-581hmmpanther:PTHR23023
hmmpanther:PTHR23023:SF37HOGENOM:HOG000240759InParanoid:Q9SVQ1InterPro:IPR000103InterPro:IPR016040InterPro:IPR020946InterPro:IPR023753
KEGG:ath:AT4G13260KO:K11816OMA:ILERSTCPaxDb:Q9SVQ1Pfam:PF00743Pfam:Q9SVQ1PhylomeDB:Q9SVQ1
PIR:T07706PRIDE:Q9SVQ1PRINTS:PR00469PRO:PR:Q9SVQ1ProteinModelPortal:Q9SVQ1Proteomes:UP000006548RefSeq:NP_193062.1
SMR:Q9SVQ1STRING:3702.AT4G13260.1SUPFAM:SSF51905TAIR:AT4G13260tair10-symbols:YUC2UniGene:At.33397UniPathway:UPA00151
UniProt:Q9SVQ1
Coordinates (TAIR10) chr4:-:7721840..7723616
Molecular Weight (calculated) 46545.70 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.12
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFVTETLGK RIHDPYVEET RCLMIPGPII VGSGPSGLAT AACLKSRDIP SLILERSTCI ASLWQHKTYD RLRLHLPKDF CELPLMPFPS SYPTYPTKQQ
101: FVQYLESYAE HFDLKPVFNQ TVEEAKFDRR CGLWRVRTTG GKKDETMEYV SRWLVVATGE NAEEVMPEID GIPDFGGPIL HTSSYKSGEI FSEKKILVVG
201: CGNSGMEVCL DLCNFNALPS LVVRDSVHVL PQEMLGISTF GISTSLLKWF PVHVVDRFLL RMSRLVLGDT DRLGLVRPKL GPLERKIKCG KTPVLDVGTL
301: AKIRSGHIKV YPELKRVMHY SAEFVDGRVD NFDAIILATG YKSNVPMWLK GVNMFSEKDG FPHKPFPNGW KGESGLYAVG FTKLGLLGAA IDAKKIAEDI
401: EVQRHFLPLA RPQHC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)