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AT4G13240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 9
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 9 (ROPGEF9); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 8 (TAIR:AT3G24620.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 306; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12238eggNOG:ENOG410IH1BeggNOG:ENOG410YG86EMBL:AL049751EMBL:AL161535EMBL:CP002687EMBL:DQ446830
EMBL:DQ653196EnsemblPlants:AT4G13240EnsemblPlants:AT4G13240.1entrez:826941GeneID:826941Genevisible:Q9SVQ3GO:GO:0005089
GO:GO:0005886GO:GO:0043547GO:GO:0080092Gramene:AT4G13240.1hmmpanther:PTHR33101hmmpanther:PTHR33101:SF10HOGENOM:HOG000238290
InParanoid:Q9SVQ3IntAct:Q9SVQ3InterPro:IPR005512KEGG:ath:AT4G13240MINT:MINT-8342700OMA:QRDDKWWPaxDb:Q9SVQ3
Pfam:PF03759Pfam:Q9SVQ3Pfscan:PS51334PhylomeDB:Q9SVQ3PIR:T07704PRIDE:Q9SVQ3PRO:PR:Q9SVQ3
PROSITE:PS51334ProteinModelPortal:Q9SVQ3Proteomes:UP000006548RefSeq:NP_193060.1SMR:Q9SVQ3TAIR:AT4G13240tair10-symbols:ATROPGEF9
tair10-symbols:ROPGEF9UniGene:At.54299UniProt:Q9SVQ3
Coordinates (TAIR10) chr4:+:7680153..7682414
Molecular Weight (calculated) 58175.90 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.65
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)