AT4G13210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G24670.1); Has 1682 Blast hits to 1675 proteins in 267 species: Archae - 0; Bacteria - 739; Metazoa - 0; Fungi - 216; Plants - 719; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7670228..7673135 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44560.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAQEIHQRL SDGEWHEHAV KDPEEIAAMV DMSIRNSTYR RKLGFFSSCS TGNPIDDCWR CDKKWHRRRK RLADCAIGFG RNAVGGRDGR YYIVTDPSDH 101: DPVTPKPGTL RYAVIQDEPL WIVFKRDMVI TLSQELIMNS FKTIDGRGVN VHIAGGACLT VQYVTNIIIH GINIHDCKRT GNAMVRSSES HYGWRTMADG 201: DGISIFGSSH IWIDHNSLSS CADGLIDAIM GSTAITISNN YLTHHNEAIL LGHTDSYTRD KMMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM 301: YAIGGSANPT INSQGNRFLA PGNRFAKEVT KRVGAGKGEW NNWNWRSQGD LMLNGAYFTS SGAGASANYA RASSLAAKSS SLVGMLTSSS GALKCRIGTL 401: C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)