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AT4G13200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0BCeggNOG:ENOG410ZQ8IEMBL:AL049751EMBL:AL161535EMBL:AY063801EMBL:AY085778EMBL:AY117202
EMBL:CP002687EnsemblPlants:AT4G13200EnsemblPlants:AT4G13200.1entrez:826935GeneID:826935Genevisible:Q8LDV3GO:GO:0009507
GO:GO:0009535GO:GO:0009579GO:GO:0010287Gramene:AT4G13200.1hmmpanther:PTHR35745hmmpanther:PTHR35745:SF1HOGENOM:HOG000210051
InParanoid:Q8LDV3KEGG:ath:AT4G13200ncoils:CoilOMA:SRSNFEFPaxDb:Q8LDV3Pfam:Q8LDV3PIR:T07700
PRIDE:Q8LDV3PRO:PR:Q8LDV3Proteomes:UP000006548RefSeq:NP_193056.1STRING:3702.AT4G13200.1SwissPalm:Q8LDV3TAIR:AT4G13200
UniGene:At.27194UniProt:Q8LDV3
Coordinates (TAIR10) chr4:-:7668292..7669166
Molecular Weight (calculated) 20430.60 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.62
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSFTIPSPS SFSLSNSYNQ TSPHSFTLRN SRSNFEFHRL RLDVESRRRS TSLRSNCSTK GTDSGENENK SVLDAFFLGK ALAEVINERI ESTVGEVLST
101: IGKFQAEQQK QVQEIQEEVL ERAKKAKERA ARETMEEQGL VASKPVAITR NPDAVVVASV TSTSTVESKT IMVDVEESSS SSDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)