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AT4G13180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.639
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to arsenic; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03980.1); Has 120427 Blast hits to 120218 proteins in 3552 species: Archae - 981; Bacteria - 79077; Metazoa - 5738; Fungi - 6213; Plants - 2676; Viruses - 2; Other Eukaryotes - 25740 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13180-MONOMEReggNOG:COG1028eggNOG:KOG0725EMBL:AF446363EMBL:AL049751EMBL:AL161535EMBL:AY088521
EMBL:AY097422EMBL:CP002687EnsemblPlants:AT4G13180EnsemblPlants:AT4G13180.1entrez:826932Gene3D:3.40.50.720GeneID:826932
GO:GO:0016491GO:GO:0046685Gramene:AT4G13180.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF429InterPro:IPR002347InterPro:IPR016040
KEGG:ath:AT4G13180KO:K00059OMA:LAEQGCHPANTHER:PTHR24322Pfam:PF00106PIR:T07698PRINTS:PR00080
PRINTS:PR00081Proteomes:UP000006548Reactome:R-ATH-5661270RefSeq:NP_193054.1STRING:3702.AT4G13180.1SUPFAM:SSF51735TAIR:AT4G13180
UniGene:At.28454UniProt:Q9SVQ9
Coordinates (TAIR10) chr4:-:7657373..7658164
Molecular Weight (calculated) 27658.30 Da
IEP (calculated) 6.76
GRAVY (calculated) 0.03
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MENNPRSSSS LPLAGRVAIV TGATRGMGRE IAIHLHSLGA RVTINYVSSS SKAELLVSEL NDSSQLKSAI AVKADVSDPD QINNLFDQTE QEFGSKVHIV
101: VNCAGVLDPK YPSLSETTLE DFDNTFTINT RGSFLCCKEA AKRVMRGGGG RIIMMSTSMV GGLAPGYGVY AASKAAVETM VKVLAKELKG SRITANCVAP
201: GPVATEMFYA GKSDETVKML AGACPMGRIG ESKDITEIVG FLAGDGGEWI NGQVIRANGG FVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)