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AT4G13030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Has 75 Blast hits to 75 proteins in 36 species: Archae - 0; Bacteria - 37; Metazoa - 10; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHCAeggNOG:ENOG4111J6EEMBL:CP002687EnsemblPlants:AT4G13030EnsemblPlants:AT4G13030.1entrez:826917ExpressionAtlas:F4JS74
Gene3D:3.40.50.300GeneID:826917GO:GO:0005525GO:GO:0016021GO:GO:0016787Gramene:AT4G13030.1hmmpanther:PTHR14241
hmmpanther:PTHR14241:SF10InParanoid:F4JS74InterPro:IPR006073InterPro:IPR027417iPTMnet:F4JS74KEGG:ath:AT4G13030ncoils:Coil
OMA:FDWRTTRPaxDb:F4JS74Pfam:PF01926PhylomeDB:F4JS74PRIDE:F4JS74ProteinModelPortal:F4JS74Proteomes:UP000006548
RefSeq:NP_193039.3SMR:F4JS74SUPFAM:SSF52540TAIR:AT4G13030TMHMM:TMhelixUniGene:At.3517UniProt:F4JS74
Coordinates (TAIR10) chr4:+:7607400..7609656
Molecular Weight (calculated) 54305.90 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.32
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGDTFKDDV VDEESSRSSS SSPCSCCFSD DLGFKDDVSE ENFTNFSNHV TDLRRREKAY QEILQSHDLL LRTSKRKLRQ ARNEILSYTP GSWSDVKLSD
101: YNIPKTTSIM LVGPKGAGKS SLVNKITRVI EDDAFLLDRA QESFGTPSKG GTYFVQEYMI SRGGSASFCL YDTRGLSRIS SSDNTSMIEQ WMTRGVLHGE
201: PVIWASDSSD LKDRLIRDGG TGYERRKVNS IIFVVNAVEI LKSMECETSY ASMITTAFNS PILLFKDDKP AVVMTHGDML SREERARVRV FLGELLGIPP
301: HKQIFDIPES RDTATAITIC NLLCYSLQHA DKNFVFLPKK NFTISKVGGG GLTKWISLLD IISIALVLFM ALASIWFVTH NPVSGQKLAN ETQQKLLKFP
401: SPWLNNLTHK AKPMRRFGPK RIIKGPNLAC VQHPKSEFVP ESEPISIDLH IARRLWFNEE QVAEAEPSFD WRTTRRLWYV E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)