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AT4G13010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.914
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23549413 (2013): plastid
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:17644812 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Oxidoreductase, zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 34133 Blast hits to 33976 proteins in 2527 species: Archae - 549; Bacteria - 21108; Metazoa - 1143; Fungi - 3531; Plants - 1393; Viruses - 3; Other Eukaryotes - 6406 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1722-MONOMEREC:1.-.-.-eggNOG:COG0604eggNOG:KOG1198EMBL:AF412068EMBL:AL079349EMBL:AL161535
EMBL:AY045857EMBL:AY056396EMBL:AY117154EMBL:CP002687EnsemblPlants:AT4G13010EnsemblPlants:AT4G13010.1entrez:826914
Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:826914Genevisible:Q9SV68GO:GO:0005773GO:GO:0005886GO:GO:0008270
GO:GO:0009507GO:GO:0009535GO:GO:0009706GO:GO:0009941GO:GO:0016491Gramene:AT4G13010.1hmmpanther:PTHR11695
hmmpanther:PTHR11695:SF507HOGENOM:HOG000294678InParanoid:Q9SV68InterPro:IPR002085InterPro:IPR011032InterPro:IPR013154InterPro:IPR016040
InterPro:IPR020843KEGG:ath:AT4G13010OMA:HCANGIPPANTHER:PTHR11695PaxDb:Q9SV68Pfam:PF08240Pfam:PF13602
Pfam:Q9SV68PhylomeDB:Q9SV68PIR:T10203PRIDE:Q9SV68PRO:PR:Q9SV68ProteinModelPortal:Q9SV68Proteomes:UP000006548
RefSeq:NP_193037.1SMART:SM00829SMR:Q9SV68STRING:3702.AT4G13010.1SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT4G13010
UniGene:At.22617UniProt:Q9SV68
Coordinates (TAIR10) chr4:+:7600682..7602567
Molecular Weight (calculated) 34438.00 Da
IEP (calculated) 9.45
GRAVY (calculated) 0.03
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGKLMHALQ YNSYGGGAAG LEHVQVPVPT PKSNEVCLKL EATSLNPVDW KIQKGMIRPF LPRKFPCIPA TDVAGEVVEV GSGVKNFKAG DKVVAVLSHL
101: GGGGLAEFAV ATEKLTVKRP QEVGAAEAAA LPVAGLTALQ ALTNPAGLKL DGTGKKANIL VTAASGGVGH YAVQLAKLAN AHVTATCGAR NIEFVKSLGA
201: DEVLDYKTPE GAALKSPSGK KYDAVVHCAN GIPFSVFEPN LSENGKVIDI TPGPNAMWTY AVKKITMSKK QLVPLLLIPK AENLEFMVNL VKEGKVKTVI
301: DSKHPLSKAE DAWAKSIDGH ATGKIIVEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)