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AT4G12880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23549413 (2013): plastid
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : early nodulin-like protein 19
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
early nodulin-like protein 19 (ENODL19); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 17 (TAIR:AT5G15350.1); Has 1342 Blast hits to 1299 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYBXeggNOG:ENOG410YM9REMBL:AL049640EMBL:AL161535EMBL:AY072352EMBL:AY088125EMBL:BT006527
EMBL:CP002687EnsemblPlants:AT4G12880EnsemblPlants:AT4G12880.1entrez:826900ExpressionAtlas:Q9STZ8Gene3D:2.60.40.420GeneID:826900
GO:GO:0009055GO:GO:0046658GO:GO:0048046Gramene:AT4G12880.1hmmpanther:PTHR33021hmmpanther:PTHR33021:SF63HOGENOM:HOG000237627
IntAct:Q9STZ8InterPro:IPR003245InterPro:IPR008972OMA:DQHNILEPfam:PF02298Pfscan:PS51485PhylomeDB:Q9STZ8
PIR:T06646ProDom:PD003122PROSITE:PS51485Proteomes:UP000006548RefSeq:NP_193024.1SMR:Q9STZ8STRING:3702.AT4G12880.1
SUPFAM:SSF49503TAIR:AT4G12880tair10-symbols:AtENODL19tair10-symbols:ENODL19TMHMM:TMhelixUniGene:At.47469UniGene:At.73069
UniProt:Q9STZ8
Coordinates (TAIR10) chr4:-:7544572..7545226
Molecular Weight (calculated) 16133.60 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.24
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSMVLISA VVLAFLVAAP IPEVTAKKYL VGDKKFWNPN INYTLWAQGK HFYVGDWLYF VFYRDQHNIL EVNKADYEKC ISNRPIRNYT RGAGRDIVPL
101: YETRRYYLLD GRGGCVQGMK LDVLVETPPP PPPFTPPPPA Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)