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AT4G12860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.878
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EF hand calcium-binding protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unfertilized embryo sac 14 (UNE14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: cytoplasm; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 11 (TAIR:AT3G07490.1); Has 24675 Blast hits to 17481 proteins in 1590 species: Archae - 2; Bacteria - 226; Metazoa - 10763; Fungi - 4223; Plants - 5412; Viruses - 0; Other Eukaryotes - 4049 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AL049640EMBL:AL161535EMBL:CP002687EMBL:DQ056648EnsemblPlants:AT4G12860
EnsemblPlants:AT4G12860.1entrez:826898Gene3D:1.10.238.10GeneID:826898Genevisible:Q9SU00GO:GO:0005509GO:GO:0005737
GO:GO:0009567Gramene:AT4G12860.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF586HOGENOM:HOG000233018InParanoid:Q9SU00InterPro:IPR002048
InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT4G12860KO:K13448OMA:MVPENEIPaxDb:Q9SU00Pfam:PF13499
Pfam:Q9SU00Pfscan:PS50222PhylomeDB:Q9SU00PIR:T06644PRIDE:Q9SU00PRO:PR:Q9SU00PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9SU00Proteomes:UP000006548RefSeq:NP_193022.1scanprosite:PS00018SMART:SM00054SMR:Q9SU00
STRING:3702.AT4G12860.1SUPFAM:SSF47473TAIR:AT4G12860tair10-symbols:UNE14UniGene:At.51389UniProt:Q9SU00
Coordinates (TAIR10) chr4:-:7538444..7538902
Molecular Weight (calculated) 17183.40 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.59
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRGELSRVF QMFDKNGDGK IAKNELKDFF KSVGIMVPEN EINEMIAKMD VNGDGAMDID EFGSLYQEMV EEKEEEEDMR EAFRVFDQNG DGFITDEELR
101: SVLASMGLKQ GRTLEDCKKM ISKVDVDGDG MVNFKEFKQM MRGGGFAALS SN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)