AT4G12750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like transcriptional regulator | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G44180.1); Has 164 Blast hits to 146 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 152; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7498009..7503920 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 127812.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.93 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1131 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRKSPLQVQ ALEGFYLEQM YPTPKEMEDL GKSLGLTLKE VRGWFKRRRS RGKGVKSMAN DGLGAKNPQL YDRSLMRSST SSRCVGVAVE ERCIVGTRKA 0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS 0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER 0301: HERGNPLTCS CHHPSSGSHG CFLCKGIAMR SSDSSLLFPD LLPKFPPNSV QMRMPFGLHP WNSSPESVKK LFKVVHFLYT YSVTLDIGPF TLDEFTRAFH 0401: DKDSLLLGKI HLSLLKLLLL DVETELERGS FSNLSISCKF LALLQSVESQ ILILDMWRNS LNSLTWTELL RQILVAAGYG SLKCAVQSEE LSKERKLMKK 0501: YGLRLGTLKG ELFRMLNGQG NNGLKISELA DAPEVAVLNL ATVPEERENS ICSTLASDIT LFEKISESTY RVRVNCFSED PDKSQSDSDD SGSVDDESDD 0601: CSISSGDEIE HVSENPALRK VKCRKRRKHK SKMREVCSEI DESHPGEPWL LGLMEGEYSD LSVEEKLDVF VALIDLLSSG STIRMEDLPR AVADCAPSIY 0701: SHGSGGKIKR SSSNQYSYPR GSWVHGGELY GIKALSKSSD SHPVDSSSIV GAFAKLAGNR ANNVHPMQSV YLGSDRRFNR YWLFLGTCNA NDPGHRCVFF 0801: ESSEDGHWEV INNKEALRAL LSVLDDRGRR EARLIESLEK RESFLCQAML SRQVTQSETA HFTDIVREDS SSPVSDIDNN LCLNEIANDQ FSSQHAAIVF 0901: EIGSKREKSL LWSLIQEFDD WIWANFNFNL NSVKHRRRSY LDSLTRCKSC HDLYWRDEKH CKICHATFEV DIDLEERYAI HAATCMRKEE CDTFPDHKVL 1001: SSQLQSLKAA VYAIESAMPE DALIGAWRKS AHRLWAKRLR RSSSVSEITQ VIGDFVGAIN EEWLWHCSDQ GQTLMGEIIN CFPSMPQTTS AIALWLVKLD 1101: TLIAPYVEKA PPERDQPLCR TRNTSRRASK R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)