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AT4G12730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 16618929
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 14517339
TAIR : plasma membrane 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:26091700 (2015): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24393051 (2015): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan 2
Curator
Summary (TAIR10)
AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan 2 (FLA2); INVOLVED IN: response to cyclopentenone; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 1 (TAIR:AT5G55730.2); Has 750 Blast hits to 734 proteins in 58 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 13; Plants - 722; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:12182eggNOG:ENOG410IGMQeggNOG:ENOG410YBWTEMBL:AF333971EMBL:AK230362EMBL:AL049640EMBL:AL161534
EMBL:AY060582EMBL:AY088236EMBL:AY142065EMBL:CP002687EnsemblPlants:AT4G12730EnsemblPlants:AT4G12730.1entrez:826885
Gene3D:2.30.180.10GeneID:826885Genevisible:Q9SU13GO:GO:0005774GO:GO:0005886GO:GO:0016020GO:GO:0031225
GO:GO:0046658Gramene:AT4G12730.1hmmpanther:PTHR32382hmmpanther:PTHR32382:SF13HOGENOM:HOG000240961InParanoid:Q9SU13InterPro:IPR000782
InterPro:IPR033254KEGG:ath:AT4G12730OMA:YHAIPDYPANTHER:PTHR32382PaxDb:Q9SU13Pfam:PF02469Pfam:Q9SU13
Pfscan:PS50213PhylomeDB:Q9SU13PIR:T06631PRIDE:Q9SU13PRO:PR:Q9SU13PROSITE:PS50213ProteinModelPortal:Q9SU13
Proteomes:UP000006548RefSeq:NP_193009.1SMART:SM00554STRING:3702.AT4G12730.1SUPFAM:SSF82153TAIR:AT4G12730tair10-symbols:FLA2
UniGene:At.3092UniGene:At.71598UniProt:Q9SU13
Coordinates (TAIR10) chr4:-:7491598..7492809
Molecular Weight (calculated) 43450.80 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.08
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYLRRAATA LVLIFQLHLF LSLSNAHNIT RILAKDPDFS TFNHYLSATH LADEINRRQT ITVLAVDNSA MSSILSNGYS LYQIRNILSL HVLVDYFGTK
101: KLHQITDGST STASMFQSTG SATGTSGYIN ITDIKGGKVA FGVQDDDSKL TAHYVKSVFE KPYNISVLHI SQVLTSPEAE APTASPSDLI LTTILEKQGC
201: KAFSDILKST GADKTFQDTV DGGLTVFCPS DSAVGKFMPK FKSLSPANKT ALVLYHGMPV YQSLQMLRSG NGAVNTLATE GNNKFDFTVQ NDGEDVTLET
301: DVVTAKVMGT LKDQEPLIVY KIDKVLLPRE IYKAVKTSAP APKSSKKKPK NAEADADGPS ADAPSDDDVE VADDKNGAVS AMITRTSNVV TAIVGLCFGV
401: WLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)