AT4G12640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G43410.4); Has 8554 Blast hits to 7148 proteins in 405 species: Archae - 8; Bacteria - 199; Metazoa - 4614; Fungi - 1472; Plants - 1436; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7462697..7467630 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92863.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||
| Length | 823 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSRGRERMM MKEDGRGRNP PSRHLWVGNL PHGILERELA DRFLRFGELE SLAFQPGRSY AFVNFNHDED AFAAIESLQG FPLSGNPLRI EFAKAEKSST 101: GSRTDDIYRH DEQRSAARGS SFVQRDSRMR YESPDTYSKS KMNDRNAEPS EVLYIGFPAS LKVDDALLRN VFSSFGEITK VTVFPGRSYA FVQFRNLMAA 201: CKAKESLQGK LFGNPRVHIC FAKSEPSSSG SGRGPSGRSL SPPYRSVDRL GSSEGYLQDR NYGSISRIPS VREPHYIEDR DLEDSEGYIF NRKRDSSSDG 301: GPAYGRSRST HRFPQDMHEY HGSPGEMGTS FRDNPHRFQT RSSEYEEPWD LPEDDYYYQE IKRLKTRSSQ PERQLPGHQL SGIEQERRPF SRASADFSPK 401: DAFERNYEAG QLRYNQTVEQ PLNLAIRNGD KSSLREPHEE LMGGYPLPSV VPERKRYTPE LNRPSLKDWN WEGTIAKGGN PICRAKCFPV GKVMDMMLPE 501: FLDCTARTGL DMLAKHYYQS SKAWVVFFVP GSDADIVFYD EFMHYLEEKQ RAAVSKLDDT TTLFLVPPSD FSEKVLKVPG KLSISGVILR LECGGSGSGG 601: PVQQQGERKD TDLLTYYGET SYSEASGAFP DVGNPRIPGP TAFLRSAGRD NQSASMDPYV EDKHDQLSHR YSGSDWPPRD TNPRSSPFID HTVQKHSGFV 701: PGKQQNADLS RYHDTETPVP AGFQPEQLTH LASSLPRQQQ QVQNTPNQPE RYAPEGRASF SHLQHAQTPS IPQLVTPQNQ NVQIQSSNSQ QQEETEANPQ 801: KRLQATLQLA AALLQQIQQA KPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)