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AT4G12120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.967
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec1/munc18-like (SM) proteins superfamily
Curator
Summary (TAIR10)
member of KEULE Gene Family
Computational
Description (TAIR10)
SEC1B; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5158eggNOG:KOG1300EMBL:AL049638EMBL:AL161533EMBL:AY088783EMBL:CP002687EnsemblPlants:AT4G12120
EnsemblPlants:AT4G12120.1entrez:826820Gene3D:3.40.50.1910GeneID:826820Genevisible:Q9SZ77GO:GO:0005886GO:GO:0006904
GO:GO:0015031Gramene:AT4G12120.1hmmpanther:PTHR11679hmmpanther:PTHR11679:SF30HOGENOM:HOG000265497InParanoid:Q9SZ77InterPro:IPR001619
InterPro:IPR027482iPTMnet:Q9SZ77KEGG:ath:AT4G12120KO:K15292OMA:IMSSACKPANTHER:PTHR11679PaxDb:Q9SZ77
Pfam:PF00995Pfam:Q9SZ77PIRSF:PIRSF005715PRIDE:Q9SZ77PRO:PR:Q9SZ77ProteinModelPortal:Q9SZ77Proteomes:UP000006548
RefSeq:NP_567388.1SMR:Q9SZ77STRING:3702.AT4G12120.1SUPFAM:SSF56815TAIR:AT4G12120tair10-symbols:ATSEC1Btair10-symbols:SEC1B
UniGene:At.33504UniProt:Q9SZ77
Coordinates (TAIR10) chr4:-:7256687..7260914
Molecular Weight (calculated) 75422.00 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.40
Length 662 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)