suba logo
AT4G12110.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.651
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sterol-4alpha-methyl oxidase 1-1
Curator
Summary (TAIR10)
Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.
Computational
Description (TAIR10)
sterol-4alpha-methyl oxidase 1-1 (SMO1-1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol C4-methyl oxidase 1-2 (TAIR:AT4G22756.1); Has 2081 Blast hits to 2076 proteins in 340 species: Archae - 0; Bacteria - 283; Metazoa - 426; Fungi - 681; Plants - 428; Viruses - 3; Other Eukaryotes - 260 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G12110-MONOMERBRENDA:1.14.13.72EC:1.14.13.72eggNOG:COG3000eggNOG:KOG0873EMBL:AF039199EMBL:AL049638
EMBL:AL161533EMBL:AY087412EMBL:AY125499EMBL:BT000546EMBL:CP002687EnsemblPlants:AT4G12110EnsemblPlants:AT4G12110.1
entrez:826819GeneID:826819Genevisible:Q8L7W5GO:GO:0000254GO:GO:0005506GO:GO:0005789GO:GO:0006633
GO:GO:0016020GO:GO:0016021GO:GO:0016126GO:GO:0080064Gramene:AT4G12110.1gramene_pathway:1.14.13.-gramene_pathway:1.14.13.72
gramene_pathway:PWY-6663gramene_pathway:PWY66-341hmmpanther:PTHR11863hmmpanther:PTHR11863:SF44HOGENOM:HOG000162289InParanoid:Q8L7W5InterPro:IPR006694
KEGG:ath:AT4G12110KO:K14423OMA:ALWFRYTPaxDb:Q8L7W5Pfam:PF04116Pfam:Q8L7W5PIR:T06618
PRIDE:Q8L7W5PRO:PR:Q8L7W5Proteomes:UP000006548Reactome:R-ATH-192105RefSeq:NP_192948.1STRING:3702.AT4G12110.1TAIR:AT4G12110
tair10-symbols:ATSMO1tair10-symbols:ATSMO1-1tair10-symbols:SMO1-1TMHMM:TMhelixUniGene:At.22169UniProt:Q8L7W5
Coordinates (TAIR10) chr4:+:7254197..7256004
Molecular Weight (calculated) 34648.80 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.04
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPYATVEEA SIALGRNLTR LETLWFDYSA TKSDYYLYCH NILFLFLVFS LVPLPLVFVE LARSASGLFN RYKIQPKVNY SLSDMFKCYK DVMTMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)