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AT4G12080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AT-hook motif nuclear-localized protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT-hook motif nuclear-localized protein 1 (AHL1); FUNCTIONS IN: DNA binding; LOCATED IN: mitochondrion, nucleolus, nucleus, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G22770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVPMeggNOG:ENOG410YFD3EMBL:AB284367EMBL:AL049638EMBL:AL161533EMBL:AY070738EMBL:AY149932
EMBL:CP002687EnsemblPlants:AT4G12080EnsemblPlants:AT4G12080.1entrez:826816GeneID:826816Genevisible:Q8VYJ2GO:GO:0003677
GO:GO:0003680GO:GO:0005634GO:GO:0005654GO:GO:0005730GO:GO:0005737GO:GO:0005739GO:GO:0006351
GO:GO:0006355GO:GO:0043565GO:GO:0098687Gramene:AT4G12080.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF7HOGENOM:HOG000116506
IntAct:Q8VYJ2InterPro:IPR005175iPTMnet:Q8VYJ2KEGG:ath:AT4G12080OMA:HVAQRSEPaxDb:Q8VYJ2Pfam:PF03479
Pfam:Q8VYJ2Pfscan:PS51742PhylomeDB:Q8VYJ2PIR:T06615PRIDE:Q8VYJ2PRO:PR:Q8VYJ2PROSITE:PS51742
ProteinModelPortal:Q8VYJ2Proteomes:UP000006548RefSeq:NP_192945.2SMR:Q8VYJ2STRING:3702.AT4G12080.1SUPFAM:SSF117856TAIR:AT4G12080
tair10-symbols:AHL1tair10-symbols:ATAHL1UniGene:At.28340UniProt:Q8VYJ2
Coordinates (TAIR10) chr4:+:7239466..7241246
Molecular Weight (calculated) 37313.80 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.39
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)