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AT4G12070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.834
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG78eggNOG:ENOG4111FV5EMBL:AK118335EMBL:AY044323EMBL:CP002687EnsemblPlants:AT4G12070EnsemblPlants:AT4G12070.1
entrez:826815GeneID:826815GO:GO:0005886Gramene:AT4G12070.1hmmpanther:PTHR33984hmmpanther:PTHR33984:SF2KEGG:ath:AT4G12070
OMA:RTHQPESPhylomeDB:Q94B03Proteomes:UP000006548RefSeq:NP_567387.1STRING:3702.AT4G12070.1TAIR:AT4G12070UniGene:At.3079
UniProt:Q94B03
Coordinates (TAIR10) chr4:+:7231941..7234272
Molecular Weight (calculated) 53283.60 Da
IEP (calculated) 6.08
GRAVY (calculated) -0.35
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRTHQPESP TARPGNTVVL SIDCLKGSSK SEEWSGDMLQ TGDIVEEIRI GSGPGSAIFK APFKGGKAWL QKVLHNSFRN KETSIVVRVR RGSDDFSDLS
101: ACIVPNESAG KRQYMLRSID DPNYTVGFSD RTESDCLGLQ ESRGSRMVEA LVKAKLQDGY VSYPWERRMQ EALPISGSSN FLSILFLPKA SAYGRTGSRY
201: NDLEDTLARA NAWLSCSQAN GVPIVFMNIQ TESLLTKISG ETASATVNTT SLSDLSNLAN TSLYGFEDYH GVDIGVVRAV RLWFAPLGVE FPLEIKLKDD
301: DTKLGFSISR TEEGFIYVSS VTDHEDESAP AARSGLSSLY REAAKASRRL VVSRVGNQKV LPWMVSSTGA IRCYDTVSLS QKLSLHRHAK VHIGLHVFLW
401: DSSATADFSS PPRSSSGGTH LLFSNETLDS TEFPRYGEVL PPRQVGDRQV MPLPDEDVFR FERENAGNAS FKFQEIPFTN ESL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)